Pre_GI: OUP Neighbours

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Query: NC_006905:3942753 Salmonella enterica subsp. enterica serovar Choleraesuis str

D: 35.749

Host Lineage: Salmonella enterica; Salmonella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This strain was isolated from a 58-year old man with sepsis and has been shown to be resistant to ciprofloxacin and ceftriaxone. This organism also causes severe disease (swine paratyphoid) in pigs. Causes enteric infections. This group of Enterobactericiae have pathogenic characteristics and are one of the most common causes of enteric infections (food poisoning) worldwide. They were named after the scientist Dr. Daniel Salmon who isolated the first organism, Salmonella choleraesuis, from the intestine of a pig. The presence of several pathogenicity islands (PAIs) that encode various virulence factors allows Salmonella spp. to colonize and infect host organisms. There are two important PAIs, Salmonella pathogenicity island 1 and 2 (SPI-1 and SPI-2) that encode two different type III secretion systems for the delivery of effector molecules into the host cell that result in internalization of the bacteria which then leads to systemic spread.

Number of Neighbours: 127




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Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

Subject IslandSubject Host Description Compositional Similarity Proposed Island FlowSubject Island D
NC_010465:429095Yersinia pseudotuberculosis YPIII, complete genome75.0306 %Subject ←→ Query29.1646
NC_005810:4469156Yersinia pestis biovar Microtus str. 91001, complete genome76.682 %Subject ←→ Query29.5112
NC_012912:4737703Dickeya zeae Ech1591, complete genome77.8922 %Subject ←→ Query29.5142
NC_003143:4006884Yersinia pestis CO92, complete genome77.6134 %Subject ←→ Query29.6176
NC_014500:2616423Dickeya dadantii 3937 chromosome, complete genome77.4786 %Subject ←→ Query29.9702
NC_008149:4053363Yersinia pestis Nepal516, complete genome75.3431 %Subject ←→ Query30.0006
NC_004088:266543Yersinia pestis KIM, complete genome75.2849 %Subject ←→ Query30.0081
NC_010694:962383Erwinia tasmaniensis, complete genome80.3799 %Subject ←→ Query30.0928
NC_006155:4302826Yersinia pseudotuberculosis IP 32953, complete genome76.731 %Subject ←→ Query30.1556
NC_015968:204969*Enterobacter asburiae LF7a chromosome, complete genome79.0564 %Subject ←→ Query30.2205
NC_010634:4234932Yersinia pseudotuberculosis PB1/+, complete genome76.5717 %Subject ←→ Query30.3016
NC_014500:2525880Dickeya dadantii 3937 chromosome, complete genome77.3315 %Subject ←→ Query30.3147
NC_014562:1935088Pantoea vagans C9-1 chromosome, complete genome77.5766 %Subject ←→ Query30.3988
NC_012880:913698Dickeya dadantii Ech703, complete genome78.1158 %Subject ←→ Query30.49
NC_015968:4389871Enterobacter asburiae LF7a chromosome, complete genome79.0625 %Subject ←→ Query30.7332
NC_004631:2755306Salmonella enterica subsp. enterica serovar Typhi Ty2, complete79.614 %Subject ←→ Query30.7575
NC_013508:1351447*Edwardsiella tarda EIB202, complete genome76.9516 %Subject ←→ Query30.7575
NC_013282:646569Cronobacter turicensis, complete genome80.3799 %Subject ←→ Query30.8062
NC_003198:2769449Salmonella enterica subsp. enterica serovar Typhi str. CT18,79.614 %Subject ←→ Query31.0494
NC_012912:2800884*Dickeya zeae Ech1591, complete genome78.1556 %Subject ←→ Query31.095
NC_015663:1902344*Enterobacter aerogenes KCTC 2190 chromosome, complete genome76.6176 %Subject ←→ Query31.1284
NC_006511:3759550Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC78.6979 %Subject ←→ Query31.1345
NC_012779:2755338*Edwardsiella ictaluri 93-146, complete genome76.2714 %Subject ←→ Query31.2622
NC_012917:4328463Pectobacterium carotovorum subsp. carotovorum PC1, complete genome75.9835 %Subject ←→ Query31.405
NC_012912:1295653Dickeya zeae Ech1591, complete genome80.4351 %Subject ←→ Query31.554
NC_011149:3895921Salmonella enterica subsp. enterica serovar Agona str. SL483,78.413 %Subject ←→ Query31.5601
NC_010067:171053Salmonella enterica subsp. arizonae serovar 62:z4,z23:--, complete76.5533 %Subject ←→ Query31.5722
NC_015663:4447984Enterobacter aerogenes KCTC 2190 chromosome, complete genome77.6103 %Subject ←→ Query31.6444
NC_004631:283289*Salmonella enterica subsp. enterica serovar Typhi Ty2, complete76.7586 %Subject ←→ Query31.6756
NC_013282:3719500*Cronobacter turicensis, complete genome82.5123 %Subject ←→ Query31.6817
NC_010102:2881714Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7,81.4737 %Subject ←→ Query32.0373
NC_004631:3841975Salmonella enterica subsp. enterica serovar Typhi Ty2, complete78.8634 %Subject ←→ Query32.0647
NC_010102:3919999Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7,78.5662 %Subject ←→ Query32.0708
NC_003197:3971905Salmonella typhimurium LT2, complete genome78.6305 %Subject ←→ Query32.0829
NC_014500:3519722Dickeya dadantii 3937 chromosome, complete genome78.4069 %Subject ←→ Query32.164
NC_012912:1229333Dickeya zeae Ech1591, complete genome76.9455 %Subject ←→ Query32.2592
NC_007712:1893066*Sodalis glossinidius str. 'morsitans', complete genome75.2512 %Subject ←→ Query32.276
NC_012912:325913Dickeya zeae Ech1591, complete genome77.2028 %Subject ←→ Query32.3565
NC_011083:3985618Salmonella enterica subsp. enterica serovar Heidelberg str. SL476,78.3885 %Subject ←→ Query32.4599
NC_013508:63914Edwardsiella tarda EIB202, complete genome75.5178 %Subject ←→ Query32.531
NC_003198:3855157Salmonella enterica subsp. enterica serovar Typhi str. CT18,77.9841 %Subject ←→ Query32.5632
NC_012917:4646491Pectobacterium carotovorum subsp. carotovorum PC1, complete genome79.2463 %Subject ←→ Query32.6958
NC_015968:2195645Enterobacter asburiae LF7a chromosome, complete genome79.3689 %Subject ←→ Query33.0849
NC_013716:1756545*Citrobacter rodentium ICC168, complete genome79.2433 %Subject ←→ Query33.4286
NC_013592:2160000Dickeya dadantii Ech586, complete genome75.4075 %Subject ←→ Query33.4874
NC_012912:2285778Dickeya zeae Ech1591, complete genome79.3352 %Subject ←→ Query33.4887
NC_012912:2174183Dickeya zeae Ech1591, complete genome75.3493 %Subject ←→ Query33.679
NC_012779:3652737Edwardsiella ictaluri 93-146, complete genome76.6942 %Subject ←→ Query33.7001
NC_013282:116649*Cronobacter turicensis, complete genome78.0055 %Subject ←→ Query33.8673
NC_010102:283364*Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7,77.9044 %Subject ←→ Query33.8947
NC_012912:777592*Dickeya zeae Ech1591, complete genome77.886 %Subject ←→ Query33.9737
NC_014562:1698253Pantoea vagans C9-1 chromosome, complete genome75.0705 %Subject ←→ Query33.9839
NC_014304:77715Erwinia billingiae Eb661 plasmid pEB102, complete sequence75.2298 %Subject ←→ Query34.3324
NC_013508:3593000Edwardsiella tarda EIB202, complete genome75.1134 %Subject ←→ Query34.4706
NC_013956:4579759Pantoea ananatis LMG 20103 chromosome, complete genome75.1961 %Subject ←→ Query34.8158
NC_012779:3316877Edwardsiella ictaluri 93-146, complete genome80.6189 %Subject ←→ Query34.9445
NC_009792:808332Citrobacter koseri ATCC BAA-895, complete genome76.3879 %Subject ←→ Query35.0274
NC_010694:3055403Erwinia tasmaniensis, complete genome77.5092 %Subject ←→ Query35.0644
NC_012779:1629731Edwardsiella ictaluri 93-146, complete genome75.6801 %Subject ←→ Query35.0944
NC_009778:1902995Enterobacter sakazakii ATCC BAA-894, complete genome80.2053 %Subject ←→ Query35.1593
NC_006511:4119332*Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC75.4013 %Subject ←→ Query35.1897
NC_003198:3824187Salmonella enterica subsp. enterica serovar Typhi str. CT18,92.5582 %Subject ←→ Query35.4207
NC_010694:614985Erwinia tasmaniensis, complete genome77.4571 %Subject ←→ Query35.5876
NC_014305:126029Erwinia billingiae Eb661 plasmid pEB170, complete sequence76.492 %Subject ←→ Query35.5879
NC_003198:3586000*Salmonella enterica subsp. enterica serovar Typhi str. CT18,77.2028 %Subject ←→ Query35.6335
NC_010067:3753971Salmonella enterica subsp. arizonae serovar 62:z4,z23:--, complete85.5729 %Subject ←→ Query35.7065
NC_010067:632683Salmonella enterica subsp. arizonae serovar 62:z4,z23:--, complete82.1752 %Subject ←→ Query35.8098
NC_009832:1946401Serratia proteamaculans 568, complete genome76.7004 %Subject ←→ Query35.908
NC_012779:2424967*Edwardsiella ictaluri 93-146, complete genome76.6575 %Subject ←→ Query35.992
NC_004631:685357*Salmonella enterica subsp. enterica serovar Typhi Ty2, complete83.7469 %Subject ←→ Query36.1113
NC_004631:3809678Salmonella enterica subsp. enterica serovar Typhi Ty2, complete92.5214 %Subject ←→ Query36.1376
NC_013961:3083816Erwinia amylovora, complete genome76.0417 %Subject ←→ Query36.2172
NC_006511:682863*Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC86.0754 %Subject ←→ Query36.3874
NC_003197:4005857Salmonella typhimurium LT2, complete genome92.6501 %Subject ←→ Query36.3904
NC_011080:2789744*Salmonella enterica subsp. enterica serovar Newport str. SL254,78.9522 %Subject ←→ Query36.512
NC_011080:3976441Salmonella enterica subsp. enterica serovar Newport str. SL254,92.3744 %Subject ←→ Query36.5166
NC_007712:2287053Sodalis glossinidius str. 'morsitans', complete genome75.8701 %Subject ←→ Query36.533
NC_012880:2778795Dickeya dadantii Ech703, complete genome79.7733 %Subject ←→ Query36.5333
NC_011149:361765Salmonella enterica subsp. enterica serovar Agona str. SL483,75.8854 %Subject ←→ Query36.5643
NC_009648:3720000*Klebsiella pneumoniae subsp. pneumoniae MGH 78578, complete genome80.6556 %Subject ←→ Query36.7036
NC_009778:3454790Enterobacter sakazakii ATCC BAA-894, complete genome80.8333 %Subject ←→ Query36.7583
NC_011080:383441Salmonella enterica subsp. enterica serovar Newport str. SL254,76.0815 %Subject ←→ Query37.0114
NC_008150:1420825*Yersinia pestis Antiqua, complete genome80.5239 %Subject ←→ Query37.0184
NC_005810:1794490*Yersinia pestis biovar Microtus str. 91001, complete genome80.5668 %Subject ←→ Query37.035
NC_007712:433500Sodalis glossinidius str. 'morsitans', complete genome75.1808 %Subject ←→ Query37.0845
NC_003198:2297837Salmonella enterica subsp. enterica serovar Typhi str. CT18,83.4375 %Subject ←→ Query37.159
NC_010102:3955479Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7,90.9007 %Subject ←→ Query37.2943
NC_003143:2137945*Yersinia pestis CO92, complete genome80.2482 %Subject ←→ Query37.3318
NC_006511:3794017Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC92.0006 %Subject ←→ Query37.3602
NC_011080:2342672Salmonella enterica subsp. enterica serovar Newport str. SL254,83.8909 %Subject ←→ Query37.4165
NC_010694:2189652*Erwinia tasmaniensis, complete genome75.481 %Subject ←→ Query37.4179
NC_009648:3476000Klebsiella pneumoniae subsp. pneumoniae MGH 78578, complete genome76.5502 %Subject ←→ Query37.4593
NC_014500:2934232*Dickeya dadantii 3937 chromosome, complete genome80.046 %Subject ←→ Query37.5286
NC_006905:2355290Salmonella enterica subsp. enterica serovar Choleraesuis str83.8113 %Subject ←→ Query37.6094
NC_012779:3016327Edwardsiella ictaluri 93-146, complete genome76.9301 %Subject ←→ Query37.6194
NC_011083:4020000Salmonella enterica subsp. enterica serovar Heidelberg str. SL476,92.2672 %Subject ←→ Query37.6885
NC_012912:647369Dickeya zeae Ech1591, complete genome77.0864 %Subject ←→ Query37.7391
NC_014500:894136Dickeya dadantii 3937 chromosome, complete genome80.432 %Subject ←→ Query37.8586
NC_011149:2040396Salmonella enterica subsp. enterica serovar Agona str. SL483,78.4344 %Subject ←→ Query37.9381
NC_014500:1646854*Dickeya dadantii 3937 chromosome, complete genome79.2616 %Subject ←→ Query37.9513
NC_011149:2294500Salmonella enterica subsp. enterica serovar Agona str. SL483,84.9939 %Subject ←→ Query38.0253
NC_011149:3930358Salmonella enterica subsp. enterica serovar Agona str. SL483,92.5214 %Subject ←→ Query38.0507
NC_003198:2703013*Salmonella enterica subsp. enterica serovar Typhi str. CT18,79.1973 %Subject ←→ Query38.1505
NC_013716:4824541*Citrobacter rodentium ICC168, complete genome82.0006 %Subject ←→ Query38.2235
NC_012779:957558Edwardsiella ictaluri 93-146, complete genome76.2132 %Subject ←→ Query38.2879
NC_006511:3364448*Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC77.644 %Subject ←→ Query38.4606
NC_011750:919953Escherichia coli IAI39 chromosome, complete genome75.481 %Subject ←→ Query38.6045
NC_013282:1256769Cronobacter turicensis, complete genome80.9528 %Subject ←→ Query38.8742
NC_013508:275081*Edwardsiella tarda EIB202, complete genome75.8149 %Subject ←→ Query39.2554
NC_011080:3941909Salmonella enterica subsp. enterica serovar Newport str. SL254,76.9393 %Subject ←→ Query39.4334
NC_012779:3176820*Edwardsiella ictaluri 93-146, complete genome76.345 %Subject ←→ Query39.7546
NC_006905:2805877*Salmonella enterica subsp. enterica serovar Choleraesuis str79.0288 %Subject ←→ Query39.786
NC_012779:2281700*Edwardsiella ictaluri 93-146, complete genome75.6985 %Subject ←→ Query40.1776
NC_014121:1822895Enterobacter cloacae subsp. cloacae ATCC 13047 chromosome, complete75.625 %Subject ←→ Query40.59
NC_013592:1424560Dickeya dadantii Ech586, complete genome78.2169 %Subject ←→ Query41.2418
NC_013282:3216226*Cronobacter turicensis, complete genome80.1379 %Subject ←→ Query41.2788
NC_014228:3282500Xenorhabdus nematophila ATCC 19061, complete genome76.0815 %Subject ←→ Query41.4806
NC_012779:2928000*Edwardsiella ictaluri 93-146, complete genome78.3548 %Subject ←→ Query41.5453
NC_012779:1449500*Edwardsiella ictaluri 93-146, complete genome76.4491 %Subject ←→ Query41.6091
NC_013508:876431*Edwardsiella tarda EIB202, complete genome77.9136 %Subject ←→ Query41.7282
NC_013283:113660Cronobacter turicensis plasmid pCTU1, complete sequence76.0233 %Subject ←→ Query42.151
NC_009648:293052*Klebsiella pneumoniae subsp. pneumoniae MGH 78578, complete genome79.4424 %Subject ←→ Query43.5401
NC_014500:3175283Dickeya dadantii 3937 chromosome, complete genome76.6483 %Subject ←→ Query44.4588
NC_012779:2586175Edwardsiella ictaluri 93-146, complete genome77.883 %Subject ←→ Query45.323
NC_009778:3832000Enterobacter sakazakii ATCC BAA-894, complete genome75.2972 %Subject ←→ Query45.4902
NC_009648:1487692Klebsiella pneumoniae subsp. pneumoniae MGH 78578, complete genome76.3419 %Subject Query49.6231
NC_009648:2465613*Klebsiella pneumoniae subsp. pneumoniae MGH 78578, complete genome75.8425 %Subject Query50.7802