Pre_GI: OUP Neighbours

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Query: NC_006511:3364448 Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC

D: 38.4606

Host Lineage: Salmonella enterica; Salmonella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This serovar has a narrow host range and causes a typhoid-like (paratyphoid fever) illness in humans. It is especially prevalent in southern and eastern Asia, and has been associated with some particularly virulent outbreaks. A number of isolates are increasingly antibiotic resistant. Causes enteric infections. This group of Enterobactericiae have pathogenic characteristics and are one of the most common causes of enteric infections (food poisoning) worldwide. They were named after the scientist Dr. Daniel Salmon who isolated the first organism, Salmonella choleraesuis, from the intestine of a pig. The presence of several pathogenicity islands (PAIs) that encode various virulence factors allows Salmonella spp. to colonize and infect host organisms. There are two important PAIs, Salmonella pathogenicity island 1 and 2 (SPI-1 and SPI-2) that encode two different type III secretion systems for the delivery of effector molecules into the host cell that result in internalization of the bacteria which then leads to systemic spread.

Number of Neighbours: 51




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Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

Subject IslandSubject Host Description Compositional Similarity Proposed Island FlowSubject Island D
NC_015663:1934863Enterobacter aerogenes KCTC 2190 chromosome, complete genome76.8842 %Subject ←→ Query30.6937
NC_004631:2755306Salmonella enterica subsp. enterica serovar Typhi Ty2, complete78.3364 %Subject ←→ Query30.7575
NC_013282:646569Cronobacter turicensis, complete genome75.6036 %Subject ←→ Query30.8062
NC_003198:2769449Salmonella enterica subsp. enterica serovar Typhi str. CT18,78.3364 %Subject ←→ Query31.0494
NC_012912:2800884*Dickeya zeae Ech1591, complete genome75.9038 %Subject ←→ Query31.095
NC_006511:3759550Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC75.337 %Subject ←→ Query31.1345
NC_010067:171053Salmonella enterica subsp. arizonae serovar 62:z4,z23:--, complete78.8909 %Subject ←→ Query31.5722
NC_015663:4447984Enterobacter aerogenes KCTC 2190 chromosome, complete genome77.0925 %Subject ←→ Query31.6444
NC_004631:283289*Salmonella enterica subsp. enterica serovar Typhi Ty2, complete82.2273 %Subject ←→ Query31.6756
NC_013282:3719500*Cronobacter turicensis, complete genome79.1146 %Subject ←→ Query31.6817
NC_010102:2881714Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7,79.2463 %Subject ←→ Query32.0373
NC_010102:3919999Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7,75.2298 %Subject ←→ Query32.0708
NC_014500:3519722Dickeya dadantii 3937 chromosome, complete genome76.9026 %Subject ←→ Query32.164
NC_013716:1756545*Citrobacter rodentium ICC168, complete genome75.8885 %Subject ←→ Query33.4286
NC_010102:283364*Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7,82.6134 %Subject ←→ Query33.8947
NC_014562:1698253Pantoea vagans C9-1 chromosome, complete genome75.0735 %Subject ←→ Query33.9839
NC_002695:4153394*Escherichia coli O157:H7 str. Sakai, complete genome78.2904 %Subject ←→ Query34.7398
NC_012779:3316877Edwardsiella ictaluri 93-146, complete genome76.4553 %Subject ←→ Query34.9445
NC_009778:1902995Enterobacter sakazakii ATCC BAA-894, complete genome76.3726 %Subject ←→ Query35.1593
NC_006511:4119332*Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC79.1483 %Subject ←→ Query35.1897
NC_010694:614985Erwinia tasmaniensis, complete genome76.6023 %Subject ←→ Query35.5876
NC_003198:3586000*Salmonella enterica subsp. enterica serovar Typhi str. CT18,78.989 %Subject ←→ Query35.6335
NC_006905:3942753Salmonella enterica subsp. enterica serovar Choleraesuis str77.644 %Subject ←→ Query35.749
NC_010067:632683Salmonella enterica subsp. arizonae serovar 62:z4,z23:--, complete76.4859 %Subject ←→ Query35.8098
NC_004631:685357*Salmonella enterica subsp. enterica serovar Typhi Ty2, complete75.2267 %Subject ←→ Query36.1113
NC_004631:3809678Salmonella enterica subsp. enterica serovar Typhi Ty2, complete75.2022 %Subject ←→ Query36.1376
NC_010473:4256000*Escherichia coli str. K-12 substr. DH10B, complete genome75.3248 %Subject ←→ Query36.1868
NC_013961:3083816Erwinia amylovora, complete genome75.4626 %Subject ←→ Query36.2172
NC_006511:682863*Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC75.962 %Subject ←→ Query36.3874
NC_003197:4005857Salmonella typhimurium LT2, complete genome75.2451 %Subject ←→ Query36.3904
NC_011080:2789744*Salmonella enterica subsp. enterica serovar Newport str. SL254,82.7788 %Subject ←→ Query36.512
NC_011080:3976441Salmonella enterica subsp. enterica serovar Newport str. SL254,75.0919 %Subject ←→ Query36.5166
NC_007712:2287053Sodalis glossinidius str. 'morsitans', complete genome75.72 %Subject ←→ Query36.533
NC_011149:361765Salmonella enterica subsp. enterica serovar Agona str. SL483,77.598 %Subject ←→ Query36.5643
NC_009778:3454790Enterobacter sakazakii ATCC BAA-894, complete genome78.3793 %Subject ←→ Query36.7583
NC_011080:383441Salmonella enterica subsp. enterica serovar Newport str. SL254,77.0404 %Subject ←→ Query37.0114
NC_008150:1420825*Yersinia pestis Antiqua, complete genome75.6189 %Subject ←→ Query37.0184
NC_005810:1794490*Yersinia pestis biovar Microtus str. 91001, complete genome75.4596 %Subject ←→ Query37.035
NC_007712:433500Sodalis glossinidius str. 'morsitans', complete genome75.5515 %Subject ←→ Query37.0845
NC_003143:2137945*Yersinia pestis CO92, complete genome75.7721 %Subject ←→ Query37.3318
NC_014500:2934232*Dickeya dadantii 3937 chromosome, complete genome75.6127 %Subject ←→ Query37.5286
NC_010468:4455201*Escherichia coli ATCC 8739, complete genome76.97 %Subject ←→ Query38.0958
NC_003198:2703013*Salmonella enterica subsp. enterica serovar Typhi str. CT18,82.2825 %Subject ←→ Query38.1505
NC_013716:4824541*Citrobacter rodentium ICC168, complete genome77.7635 %Subject ←→ Query38.2235
NC_013282:1256769Cronobacter turicensis, complete genome78.8848 %Subject ←→ Query38.8742
NC_012779:3176820*Edwardsiella ictaluri 93-146, complete genome75.2328 %Subject ←→ Query39.7546
NC_006905:2805877*Salmonella enterica subsp. enterica serovar Choleraesuis str82.261 %Subject ←→ Query39.786
NC_013282:3216226*Cronobacter turicensis, complete genome76.3971 %Subject ←→ Query41.2788
NC_013283:113660Cronobacter turicensis plasmid pCTU1, complete sequence75.5423 %Subject ←→ Query42.151
NC_009648:293052*Klebsiella pneumoniae subsp. pneumoniae MGH 78578, complete genome79.1636 %Subject ←→ Query43.5401
NC_009778:3832000Enterobacter sakazakii ATCC BAA-894, complete genome75.9681 %Subject ←→ Query45.4902