Pre_GI: OUP Neighbours

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Query: NC_006155:1567306 Yersinia pseudotuberculosis IP 32953, complete genome

D: 33.2342

Host Lineage: Yersinia pseudotuberculosis; Yersinia; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This strain is a fully virulent serotype I strain isolated from a human patient. Environmental bacterium that causes gastrointestinal disease. Specific virulence factors are encoded within pathogenicity islands (PAIs) that are required for the invasive phenotype associated with Yersinia infections. One key virulence plasmid contained by the three human-specific pathogens is pCD1/pYv, which encodes a type III secretion system for the delivery of virulence proteins that contribute to internalization into the host cell. This organism was first isolated in 1883 by Malassez and Vignal and is termed pseudotuberculosis since it causes lesions in the lung that are similar to those observed during tuberculosis infection. It is ubiquitous in the environment and is a food and waterborne pathogen that affects animals as well as humans by causing gastroenteritis like Yersinia enterocolitica.

Number of Neighbours: 83




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Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

Subject IslandSubject Host Description Compositional Similarity Proposed Island FlowSubject Island D
NC_010465:429095Yersinia pseudotuberculosis YPIII, complete genome77.4602 %Subject ←→ Query29.1646
NC_008149:3648139Yersinia pestis Nepal516, complete genome76.2163 %Subject ←→ Query29.4565
NC_010465:804249Yersinia pseudotuberculosis YPIII, complete genome75.6556 %Subject ←→ Query29.499
NC_005810:4469156Yersinia pestis biovar Microtus str. 91001, complete genome78.7684 %Subject ←→ Query29.5112
NC_012912:4737703Dickeya zeae Ech1591, complete genome75.7138 %Subject ←→ Query29.5142
NC_003143:4006884Yersinia pestis CO92, complete genome76.5135 %Subject ←→ Query29.6176
NC_008150:3711953Yersinia pestis Antiqua, complete genome76.0018 %Subject ←→ Query29.7483
NC_008150:2599661Yersinia pestis Antiqua, complete genome75.9191 %Subject ←→ Query29.7787
NC_008149:4053363Yersinia pestis Nepal516, complete genome78.992 %Subject ←→ Query30.0006
NC_004088:266543Yersinia pestis KIM, complete genome79.0319 %Subject ←→ Query30.0081
NC_006155:4302826Yersinia pseudotuberculosis IP 32953, complete genome76.5319 %Subject ←→ Query30.1556
NC_003143:2778494Yersinia pestis CO92, complete genome75.3676 %Subject ←→ Query30.2293
NC_012880:1711062*Dickeya dadantii Ech703, complete genome76.9822 %Subject ←→ Query30.2924
NC_010634:4234932Yersinia pseudotuberculosis PB1/+, complete genome76.875 %Subject ←→ Query30.3016
NC_012880:913698Dickeya dadantii Ech703, complete genome75.3309 %Subject ←→ Query30.49
NC_008149:1221637Yersinia pestis Nepal516, complete genome82.1691 %Subject ←→ Query30.5812
NC_008253:2198583Escherichia coli 536, complete genome76.1703 %Subject ←→ Query30.9551
NC_012880:1127997*Dickeya dadantii Ech703, complete genome78.1495 %Subject ←→ Query30.9614
NC_012912:2800884*Dickeya zeae Ech1591, complete genome77.3131 %Subject ←→ Query31.095
NC_006155:3040769Yersinia pseudotuberculosis IP 32953, complete genome77.8983 %Subject ←→ Query31.1041
NC_006511:3759550Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC75.4657 %Subject ←→ Query31.1345
NC_015731:25493*Nitrosomonas sp. Is79A3 chromosome, complete genome76.25 %Subject ←→ Query31.2014
NC_010634:2960000Yersinia pseudotuberculosis PB1/+, complete genome77.7788 %Subject ←→ Query31.2014
NC_012917:4328463Pectobacterium carotovorum subsp. carotovorum PC1, complete genome75.0735 %Subject ←→ Query31.405
NC_008150:3529430Yersinia pestis Antiqua, complete genome76.1642 %Subject ←→ Query31.4433
NC_004088:1801819Yersinia pestis KIM, complete genome78.5294 %Subject ←→ Query31.8002
NC_004631:3841975Salmonella enterica subsp. enterica serovar Typhi Ty2, complete75.1103 %Subject ←→ Query32.0647
NC_003197:3971905Salmonella typhimurium LT2, complete genome75.1348 %Subject ←→ Query32.0829
NC_014500:3519722Dickeya dadantii 3937 chromosome, complete genome76.4369 %Subject ←→ Query32.164
NC_008149:2411161Yersinia pestis Nepal516, complete genome77.981 %Subject ←→ Query32.2349
NC_012912:1229333Dickeya zeae Ech1591, complete genome77.7512 %Subject ←→ Query32.2592
NC_007712:1893066*Sodalis glossinidius str. 'morsitans', complete genome76.8719 %Subject ←→ Query32.276
NC_012912:325913Dickeya zeae Ech1591, complete genome78.076 %Subject ←→ Query32.3565
NC_011083:3985618Salmonella enterica subsp. enterica serovar Heidelberg str. SL476,75.0888 %Subject ←→ Query32.4599
NC_012880:3915500*Dickeya dadantii Ech703, complete genome76.1887 %Subject ←→ Query32.55
NC_003198:3855157Salmonella enterica subsp. enterica serovar Typhi str. CT18,75.2482 %Subject ←→ Query32.5632
NC_013421:1954915*Pectobacterium wasabiae WPP163, complete genome77.9075 %Subject ←→ Query32.6483
NC_010465:1724000Yersinia pseudotuberculosis YPIII, complete genome78.4681 %Subject ←→ Query32.6727
NC_013592:3397304Dickeya dadantii Ech586, complete genome79.8438 %Subject ←→ Query32.6808
NC_010634:1565788Yersinia pseudotuberculosis PB1/+, complete genome96.6544 %Subject ←→ Query33.0113
NC_012880:3645304Dickeya dadantii Ech703, complete genome79.6538 %Subject ←→ Query33.3293
NC_004088:3955933Yersinia pestis KIM, complete genome76.3266 %Subject ←→ Query33.4603
NC_014394:1594071Gallionella capsiferriformans ES-2 chromosome, complete genome75.3401 %Subject ←→ Query33.463
NC_008260:187269Alcanivorax borkumensis SK2, complete genome76.7218 %Subject ←→ Query33.6056
NC_003143:2849377Yersinia pestis CO92, complete genome77.6716 %Subject ←→ Query33.8521
NC_010159:1861465Yersinia pestis Angola, complete genome78.1771 %Subject ←→ Query33.8947
NC_007712:4023516Sodalis glossinidius str. 'morsitans', complete genome75.0888 %Subject ←→ Query33.8969
NC_005810:2613456Yersinia pestis biovar Microtus str. 91001, complete genome77.8952 %Subject ←→ Query33.9433
NC_010159:1101241Yersinia pestis Angola, complete genome76.6973 %Subject ←→ Query33.9894
NC_013592:3618248*Dickeya dadantii Ech586, complete genome75.6311 %Subject ←→ Query34.4581
NC_014010:2689682*Candidatus Puniceispirillum marinum IMCC1322 chromosome, complete77.4295 %Subject ←→ Query34.6877
NC_012779:3316877Edwardsiella ictaluri 93-146, complete genome76.4185 %Subject ←→ Query34.9445
NC_009792:808332Citrobacter koseri ATCC BAA-895, complete genome76.4338 %Subject ←→ Query35.0274
NC_010694:614985Erwinia tasmaniensis, complete genome75.6771 %Subject ←→ Query35.5876
NC_013421:1545386Pectobacterium wasabiae WPP163, complete genome77.6624 %Subject ←→ Query35.9253
NC_012779:2424967*Edwardsiella ictaluri 93-146, complete genome76.9056 %Subject ←→ Query35.992
NC_013421:1143500Pectobacterium wasabiae WPP163, complete genome75.5423 %Subject ←→ Query36.4256
NC_007712:2287053Sodalis glossinidius str. 'morsitans', complete genome76.0386 %Subject ←→ Query36.533
NC_012880:2778795Dickeya dadantii Ech703, complete genome76.0754 %Subject ←→ Query36.5333
NC_012779:2064582Edwardsiella ictaluri 93-146, complete genome78.4191 %Subject ←→ Query37.0151
NC_007712:433500Sodalis glossinidius str. 'morsitans', complete genome77.0527 %Subject ←→ Query37.0845
NC_014394:3036758Gallionella capsiferriformans ES-2 chromosome, complete genome78.606 %Subject ←→ Query37.5243
NC_012962:3568046Photorhabdus asymbiotica, complete genome77.9289 %Subject ←→ Query37.813
NC_014500:894136Dickeya dadantii 3937 chromosome, complete genome77.1569 %Subject ←→ Query37.8586
NC_011149:2040396Salmonella enterica subsp. enterica serovar Agona str. SL483,77.1814 %Subject ←→ Query37.9381
NC_014500:1646854*Dickeya dadantii 3937 chromosome, complete genome75.1409 %Subject ←→ Query37.9513
NC_005126:1265071Photorhabdus luminescens subsp. laumondii TTO1, complete genome75.1532 %Subject ←→ Query37.9976
NC_010175:448020*Chloroflexus aurantiacus J-10-fl, complete genome75.2237 %Subject ←→ Query38.7059
NC_012880:1585255Dickeya dadantii Ech703, complete genome76.8045 %Subject ←→ Query39.2242
NC_012032:448161*Chloroflexus sp. Y-400-fl, complete genome75.2022 %Subject ←→ Query39.6441
NC_012779:3176820*Edwardsiella ictaluri 93-146, complete genome75.6985 %Subject ←→ Query39.7546
NC_012779:305969Edwardsiella ictaluri 93-146, complete genome75.2328 %Subject ←→ Query39.836
NC_007908:1328832*Rhodoferax ferrireducens T118, complete genome76.1458 %Subject ←→ Query40.2748
NC_012779:2856051Edwardsiella ictaluri 93-146, complete genome75.6618 %Subject ←→ Query40.677
NC_008344:1364142*Nitrosomonas eutropha C91, complete genome75.0797 %Subject ←→ Query40.6814
NC_013592:1424560Dickeya dadantii Ech586, complete genome75.7077 %Subject ←→ Query41.2418
NC_014228:3282500Xenorhabdus nematophila ATCC 19061, complete genome77.9105 %Subject ←→ Query41.4806
NC_016026:1760856*Micavibrio aeruginosavorus ARL-13 chromosome, complete genome75.4994 %Subject ←→ Query41.4931
NC_012779:1449500*Edwardsiella ictaluri 93-146, complete genome77.3101 %Subject ←→ Query41.6091
NC_016026:1969766Micavibrio aeruginosavorus ARL-13 chromosome, complete genome76.3695 %Subject Query45.6901
NC_009648:2465613*Klebsiella pneumoniae subsp. pneumoniae MGH 78578, complete genome75.1899 %Subject Query50.7802
NC_014541:1165991Ferrimonas balearica DSM 9799 chromosome, complete genome76.0049 %Subject Query51.4043
NC_015424:1689500Aeromonas veronii B565 chromosome, complete genome75.9498 %Subject Query53.0358