Pre_GI: OUP MCL Sub Cluster Neighbours

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Query: NC_005363:3562205 Bdellovibrio bacteriovorus HD100, complete genome

D: 39.7128

Host Lineage: Bdellovibrio bacteriovorus; Bdellovibrio; Bdellovibrionaceae; Bdellovibrionales; Proteobacteria; Bacteria

General Information: This organism is unique in that it is a bacteriolytic microbe that preys on other gram negative bacteria. It is found throughout soil, sewage, and aquatic environments, and is often associated with biofilms. This organism has a biphasic lifestyle which consists of a free living and motile phase, and an attack phase where the bacterium attaches to a host cell, burrows into the periplasm, and begins to degrade the host from the inside out. The organism sheds its flagellum once it makes irreversible contact with the host, and when it is inside, begins to form a bdelloplast, resulting in degradation of the host cell inner membrane and alteration of its peptidoglycan layer, resulting in a spherical cell. The Bdellovibrio cell elongates until it forms a long coiled structure which then divides, forming many flagellated progeny which continue the degradation of the host cell to propagate the life cycle. The genome encodes a large number of degradative and lytic enzymes which are used to degrade the host organism. The organism has numerous deficiencies in its amino acid biosynthetic pathways, suggesting it utilizes prey metabolites for protein synthesis.

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Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

Subject IslandSubject Host DescriptionProposed Island FlowSubject Island D
NC_007520:2391675Thiomicrospira crunogena XCL-2, complete genomeSubject Query26.1369
NC_020301:1084993*Bartonella vinsonii subsp. berkhoffii str. Winnie, complete genomeSubject Query26.2524
NC_008497:32160Lactobacillus brevis ATCC 367, complete genomeSubject Query26.6719
NC_008497:79144*Lactobacillus brevis ATCC 367, complete genomeSubject Query27.061
NC_008497:556365*Lactobacillus brevis ATCC 367, complete genomeSubject Query27.4289
NC_018528:1932000Lactobacillus helveticus R0052 chromosome, complete genomeSubject Query27.4908
NC_008497:447427*Lactobacillus brevis ATCC 367, complete genomeSubject Query27.6386
NC_008497:2038612*Lactobacillus brevis ATCC 367, complete genomeSubject Query28.1022
NC_016112:562570Methylomicrobium alcaliphilum chromosome, complete genomeSubject Query29.2893
NC_014554:1339566*Lactobacillus plantarum subsp. plantarum ST-III chromosome,Subject Query29.6723
NC_014554:337268Lactobacillus plantarum subsp. plantarum ST-III chromosome,Subject ←→ Query29.7285
NC_016894:377446*Acetobacterium woodii DSM 1030 chromosome, complete genomeSubject ←→ Query29.7292
NC_015428:2291430*Lactobacillus buchneri NRRL B-30929 chromosome, complete genomeSubject ←→ Query30.5599
NC_007520:1940120*Thiomicrospira crunogena XCL-2, complete genomeSubject ←→ Query31.019
NC_016894:3329562*Acetobacterium woodii DSM 1030 chromosome, complete genomeSubject ←→ Query31.2239
NC_007576:1854136*Lactobacillus sakei subsp. sakei 23K, complete genomeSubject ←→ Query31.3415
NC_007576:1747662*Lactobacillus sakei subsp. sakei 23K, complete genomeSubject ←→ Query32.1833
NC_014554:1019730Lactobacillus plantarum subsp. plantarum ST-III chromosome,Subject ←→ Query32.3869
NC_017516:149657*Neisseria meningitidis H44/76 chromosome, complete genomeSubject ←→ Query32.8672
NC_013198:1921500*Lactobacillus rhamnosus GG, complete genomeSubject ←→ Query33.277
NC_017513:141291*Neisseria meningitidis G2136 chromosome, complete genomeSubject ←→ Query33.7427
NC_013198:298000*Lactobacillus rhamnosus GG, complete genomeSubject ←→ Query33.8795
NC_015572:1421782Methylomonas methanica MC09 chromosome, complete genomeSubject ←→ Query34.0502
NC_015581:128350*Thioalkalimicrobium cyclicum ALM1 chromosome, complete genomeSubject ←→ Query34.2108
NC_013199:282901*Lactobacillus rhamnosus Lc 705, complete genomeSubject ←→ Query34.5452
NC_017512:2087098*Neisseria meningitidis WUE 2594, complete genomeSubject ←→ Query34.8796
NC_013199:1886271*Lactobacillus rhamnosus Lc 705, complete genomeSubject ←→ Query35.0179
NC_008497:1498430*Lactobacillus brevis ATCC 367, complete genomeSubject ←→ Query35.4937
NC_020409:297258*Desulfovibrio piezophilus str. nov C1TLV30 chromosome, completeSubject ←→ Query35.6929
NC_013016:2014368*Neisseria meningitidis alpha14 chromosome, complete genomeSubject ←→ Query36.1685
NC_008526:2489196*Lactobacillus casei ATCC 334, complete genomeSubject ←→ Query36.8865
NC_015428:823420*Lactobacillus buchneri NRRL B-30929 chromosome, complete genomeSubject ←→ Query37.54
NC_013199:2536705*Lactobacillus rhamnosus Lc 705, complete genomeSubject ←→ Query37.5527
NC_013198:813830*Lactobacillus rhamnosus GG, complete genomeSubject ←→ Query37.9547
NC_015428:700479*Lactobacillus buchneri NRRL B-30929 chromosome, complete genomeSubject ←→ Query38.8838
NC_013199:811929*Lactobacillus rhamnosus Lc 705, complete genomeSubject ←→ Query39.2072
NC_017514:2096452*Neisseria meningitidis M01-240149 chromosome, complete genomeSubject ←→ Query39.4599
NC_005363:3562205Bdellovibrio bacteriovorus HD100, complete genomeSubject ←→ Query39.7128
NC_015572:4209000*Methylomonas methanica MC09 chromosome, complete genomeSubject ←→ Query40.0218
NC_017518:150991*Neisseria meningitidis NZ-05/33 chromosome, complete genomeSubject ←→ Query40.1587
NC_017505:148644*Neisseria meningitidis alpha710 chromosome, complete genomeSubject ←→ Query40.5057
NC_017515:155634*Neisseria meningitidis M04-240196 chromosome, complete genomeSubject ←→ Query41.2715
NC_010610:107500Lactobacillus fermentum IFO 3956, complete genomeSubject ←→ Query41.4381