Pre_GI: OUP Neighbours

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Query: NC_005140:960261 Vibrio vulnificus YJ016 chromosome II, complete sequence

D: 28.0411

Host Lineage: Vibrio vulnificus; Vibrio; Vibrionaceae; Vibrionales; Proteobacteria; Bacteria

General Information: This is a Biotype 1 hospital isolate from Taiwan. It contains larger chromosomes and >1000 genes as compared to Vibrio cholerae and contains a conjugative plasmid, pYJ016. There are numerous virulence factors including a cytolysin, protease, capsular polysaccharide as well as iron-uptake systems encoded in the genome. This genus is abundant in marine or freshwater environments such as estuaries, brackish ponds, or coastal areas; regions that provide an important reservoir for the organism in between outbreaks of the disease. Vibrio can affect shellfish, finfish, and other marine animals and a number of species are pathogenic for humans. Organisms of this species are opportunistic pathogens that can attack immunocompromised patients and causes gastroenteritis (inflammation of mucous membranes of stomach and intestine), wound infections, and primary septicemia (spread of the organism through the blood). This organism is the major cause of death from eating raw oysters, especially in people with liver damage. It only affects humans and other primates.

Number of Neighbours: 24




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Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

Subject IslandSubject Host Description Compositional Similarity Proposed Island FlowSubject Island D
NC_004459:1794540*Vibrio vulnificus CMCP6 chromosome I, complete sequence80.9436 %Subject ←→ Query31.6148
NC_004460:973738Vibrio vulnificus CMCP6 chromosome II, complete sequence79.2984 %Subject ←→ Query30.5138
NC_004460:1313468Vibrio vulnificus CMCP6 chromosome II, complete sequence78.8909 %Subject ←→ Query33.3414
NC_015276:565701Marinomonas mediterranea MMB-1 chromosome, complete genome78.8358 %Subject ←→ Query29.7331
NC_002506:207097*Vibrio cholerae O1 biovar eltor str. N16961 chromosome II, complete78.7837 %Subject ←→ Query37.898
NC_002505:168532Vibrio cholerae O1 biovar eltor str. N16961 chromosome I, complete78.367 %Subject Query38.3098
NC_004459:1679335*Vibrio vulnificus CMCP6 chromosome I, complete sequence78.2261 %Subject ←→ Query35.7874
NC_013457:979102*Vibrio sp. Ex25 chromosome 2, complete genome78.0699 %Subject ←→ Query36.055
NC_015276:2552484Marinomonas mediterranea MMB-1 chromosome, complete genome77.8339 %Subject ←→ Query30.9404
NC_011753:3088952*Vibrio splendidus LGP32 chromosome 1, complete genome77.5766 %Subject ←→ Query27.9102
NC_010554:2646806Proteus mirabilis HI4320, complete genome77.5521 %Subject ←→ Query35.3988
NC_005140:1820970Vibrio vulnificus YJ016 chromosome II, complete sequence77.5306 %Subject ←→ Query27.8788
NC_004460:1618892Vibrio vulnificus CMCP6 chromosome II, complete sequence77.4694 %Subject ←→ Query29.7179
NC_002505:980595Vibrio cholerae O1 biovar eltor str. N16961 chromosome I, complete77.4479 %Subject ←→ Query33.004
NC_005140:340000Vibrio vulnificus YJ016 chromosome II, complete sequence77.3438 %Subject ←→ Query26.4713
NC_015276:855150Marinomonas mediterranea MMB-1 chromosome, complete genome77.0987 %Subject ←→ Query32.162
NC_015559:3645181Marinomonas posidonica IVIA-Po-181 chromosome, complete genome76.5717 %Subject ←→ Query33.4326
NC_005139:2731623*Vibrio vulnificus YJ016 chromosome I, complete sequence76.4338 %Subject ←→ Query31.989
NC_015276:2852010Marinomonas mediterranea MMB-1 chromosome, complete genome76.0202 %Subject ←→ Query30.4475
NC_015497:3614817Glaciecola agarilytica 4H-3-7+YE-5 chromosome, complete genome75.8793 %Subject ←→ Query26.8361
NC_011026:3044717*Chloroherpeton thalassium ATCC 35110, complete genome75.4749 %Subject ←→ Query27.627
NC_008321:458811Shewanella sp. MR-4, complete genome75.2145 %Subject ←→ Query31.5836
NC_015276:2804874*Marinomonas mediterranea MMB-1 chromosome, complete genome75.144 %Subject ←→ Query29.8547
NC_007520:2391675Thiomicrospira crunogena XCL-2, complete genome75.0766 %Subject ←→ Query26.1369