Pre_GI: OUP Neighbours

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Query: NC_004631:685357 Salmonella enterica subsp. enterica serovar Typhi Ty2, complete

D: 36.1113

Host Lineage: Salmonella enterica; Salmonella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This pathogenic strain of Salmonella typhi was isolated in the early 1970s. It contains no multidrug resistance plasmids and has been used for vaccine development. This serovar is a human-specific organism that causes the life-threatening illness Typhoid fever which is acquired by coming into contact with contaminated food or water. Annually, 17 million people are infected, with 600,000 fatalities, mostly in developing countries. It contains multiple fimbrial operons that may be used to create extracellular appendages for attachment and entry into host intestinal epithelial cells. Causes enteric infections. This group of Enterobactericiae have pathogenic characteristics and are one of the most common causes of enteric infections (food poisoning) worldwide. They were named after the scientist Dr. Daniel Salmon who isolated the first organism, Salmonella choleraesuis, from the intestine of a pig. The presence of several pathogenicity islands (PAIs) that encode various virulence factors allows Salmonella spp. to colonize and infect host organisms. There are two important PAIs, Salmonella pathogenicity island 1 and 2 (SPI-1 and SPI-2) that encode two different type III secretion systems for the delivery of effector molecules into the host cell that result in internalization of the bacteria which then leads to systemic spread.

Number of Neighbours: 132




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Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

Subject IslandSubject Host Description Compositional Similarity Proposed Island FlowSubject Island D
NC_009792:808332Citrobacter koseri ATCC BAA-895, complete genome76.5135 %Subject ←→ Query35.0274
NC_013716:4824541*Citrobacter rodentium ICC168, complete genome83.7684 %Subject ←→ Query38.2235
NC_013716:1756545*Citrobacter rodentium ICC168, complete genome75.9436 %Subject ←→ Query33.4286
NC_013283:113660Cronobacter turicensis plasmid pCTU1, complete sequence75.9038 %Subject ←→ Query42.151
NC_013282:3719500*Cronobacter turicensis, complete genome79.4945 %Subject ←→ Query31.6817
NC_013282:3216226*Cronobacter turicensis, complete genome80.1226 %Subject ←→ Query41.2788
NC_013282:1256769Cronobacter turicensis, complete genome79.6446 %Subject ←→ Query38.8742
NC_013282:116649*Cronobacter turicensis, complete genome78.5478 %Subject ←→ Query33.8673
NC_013282:646569Cronobacter turicensis, complete genome78.8327 %Subject ←→ Query30.8062
NC_013282:3962188*Cronobacter turicensis, complete genome76.6483 %Subject ←→ Query34.8164
NC_014500:2616423Dickeya dadantii 3937 chromosome, complete genome80.4902 %Subject ←→ Query29.9702
NC_014500:2525880Dickeya dadantii 3937 chromosome, complete genome79.2402 %Subject ←→ Query30.3147
NC_014500:1646854*Dickeya dadantii 3937 chromosome, complete genome77.1569 %Subject ←→ Query37.9513
NC_014500:894136Dickeya dadantii 3937 chromosome, complete genome79.1422 %Subject ←→ Query37.8586
NC_014500:3519722Dickeya dadantii 3937 chromosome, complete genome76.9822 %Subject ←→ Query32.164
NC_014500:3175283Dickeya dadantii 3937 chromosome, complete genome77.0006 %Subject ←→ Query44.4588
NC_014500:2934232*Dickeya dadantii 3937 chromosome, complete genome78.1618 %Subject ←→ Query37.5286
NC_013592:2160000Dickeya dadantii Ech586, complete genome78.4498 %Subject ←→ Query33.4874
NC_013592:1424560Dickeya dadantii Ech586, complete genome82.7849 %Subject ←→ Query41.2418
NC_012880:913698Dickeya dadantii Ech703, complete genome77.0159 %Subject ←→ Query30.49
NC_012880:2778795Dickeya dadantii Ech703, complete genome76.6697 %Subject ←→ Query36.5333
NC_012912:1229333Dickeya zeae Ech1591, complete genome77.6164 %Subject ←→ Query32.2592
NC_012912:647369Dickeya zeae Ech1591, complete genome75.4412 %Subject ←→ Query37.7391
NC_012912:4737703Dickeya zeae Ech1591, complete genome76.921 %Subject ←→ Query29.5142
NC_012912:325913Dickeya zeae Ech1591, complete genome75.9191 %Subject ←→ Query32.3565
NC_012912:2285778Dickeya zeae Ech1591, complete genome81.6728 %Subject ←→ Query33.4887
NC_012912:2174183Dickeya zeae Ech1591, complete genome78.8388 %Subject ←→ Query33.679
NC_012912:1295653Dickeya zeae Ech1591, complete genome81.3817 %Subject ←→ Query31.554
NC_012779:3570720*Edwardsiella ictaluri 93-146, complete genome76.2776 %Subject ←→ Query34.4297
NC_012779:1629731Edwardsiella ictaluri 93-146, complete genome75.9835 %Subject ←→ Query35.0944
NC_012779:2664849Edwardsiella ictaluri 93-146, complete genome75.9467 %Subject ←→ Query33.7832
NC_012779:3316877Edwardsiella ictaluri 93-146, complete genome81.7494 %Subject ←→ Query34.9445
NC_012779:2586175Edwardsiella ictaluri 93-146, complete genome77.7757 %Subject ←→ Query45.323
NC_012779:3176820*Edwardsiella ictaluri 93-146, complete genome77.6164 %Subject ←→ Query39.7546
NC_012779:2424967*Edwardsiella ictaluri 93-146, complete genome76.4767 %Subject ←→ Query35.992
NC_012779:305969Edwardsiella ictaluri 93-146, complete genome78.1863 %Subject ←→ Query39.836
NC_012779:996879Edwardsiella ictaluri 93-146, complete genome75.8303 %Subject ←→ Query39.7678
NC_012779:2281700*Edwardsiella ictaluri 93-146, complete genome77.6317 %Subject ←→ Query40.1776
NC_012779:3016327Edwardsiella ictaluri 93-146, complete genome77.1844 %Subject ←→ Query37.6194
NC_012779:957558Edwardsiella ictaluri 93-146, complete genome76.6391 %Subject ←→ Query38.2879
NC_012779:1939747Edwardsiella ictaluri 93-146, complete genome76.299 %Subject ←→ Query34.6849
NC_012779:2928000*Edwardsiella ictaluri 93-146, complete genome79.3995 %Subject ←→ Query41.5453
NC_012779:3652737Edwardsiella ictaluri 93-146, complete genome78.7745 %Subject ←→ Query33.7001
NC_012779:1820244*Edwardsiella ictaluri 93-146, complete genome75.1042 %Subject ←→ Query33.3621
NC_012779:2755338*Edwardsiella ictaluri 93-146, complete genome77.6471 %Subject ←→ Query31.2622
NC_013508:876431*Edwardsiella tarda EIB202, complete genome75.1042 %Subject ←→ Query41.7282
NC_013508:275081*Edwardsiella tarda EIB202, complete genome75.7751 %Subject ←→ Query39.2554
NC_013508:1351447*Edwardsiella tarda EIB202, complete genome77.7083 %Subject ←→ Query30.7575
NC_015663:4447984Enterobacter aerogenes KCTC 2190 chromosome, complete genome76.1428 %Subject ←→ Query31.6444
NC_015663:1902344*Enterobacter aerogenes KCTC 2190 chromosome, complete genome76.3266 %Subject ←→ Query31.1284
NC_015968:4389871Enterobacter asburiae LF7a chromosome, complete genome79.0962 %Subject ←→ Query30.7332
NC_015968:2195645Enterobacter asburiae LF7a chromosome, complete genome77.8646 %Subject ←→ Query33.0849
NC_015968:204969*Enterobacter asburiae LF7a chromosome, complete genome78.6673 %Subject ←→ Query30.2205
NC_014121:1822895Enterobacter cloacae subsp. cloacae ATCC 13047 chromosome, complete82.5092 %Subject ←→ Query40.59
NC_009778:3832000Enterobacter sakazakii ATCC BAA-894, complete genome76.8321 %Subject ←→ Query45.4902
NC_009778:3454790Enterobacter sakazakii ATCC BAA-894, complete genome77.2457 %Subject ←→ Query36.7583
NC_009778:1902995Enterobacter sakazakii ATCC BAA-894, complete genome77.6103 %Subject ←→ Query35.1593
NC_013961:3083816Erwinia amylovora, complete genome77.932 %Subject ←→ Query36.2172
NC_014304:77715Erwinia billingiae Eb661 plasmid pEB102, complete sequence75.962 %Subject ←→ Query34.3324
NC_014305:126029Erwinia billingiae Eb661 plasmid pEB170, complete sequence79.5221 %Subject ←→ Query35.5879
NC_004547:3817656Erwinia carotovora subsp. atroseptica SCRI1043, complete genome78.9124 %Subject ←→ Query34.15
NC_010694:962383Erwinia tasmaniensis, complete genome82.8462 %Subject ←→ Query30.0928
NC_010694:614985Erwinia tasmaniensis, complete genome77.3683 %Subject ←→ Query35.5876
NC_010694:3055403Erwinia tasmaniensis, complete genome79.4608 %Subject ←→ Query35.0644
NC_008563:3119284Escherichia coli APEC O1, complete genome79.4853 %Subject ←→ Query31.9127
NC_004431:1352906Escherichia coli CFT073, complete genome78.2904 %Subject ←→ Query36.4239
NC_011750:919953Escherichia coli IAI39 chromosome, complete genome78.2292 %Subject ←→ Query38.6045
NC_011750:2009889Escherichia coli IAI39 chromosome, complete genome79.1391 %Subject ←→ Query39.0625
NC_011750:1931384Escherichia coli IAI39 chromosome, complete genome78.989 %Subject ←→ Query37.6581
AP010958:1472506Escherichia coli O103:H2 str. 12009 DNA, complete genome78.0208 %Subject ←→ Query36.7127
NC_002655:1909139Escherichia coli O157:H7 EDL933, complete genome78.75 %Subject ←→ Query38.4667
NC_002695:2893951Escherichia coli O157:H7 str. Sakai, complete genome78.989 %Subject ←→ Query37.275
NC_002695:2158314Escherichia coli O157:H7 str. Sakai, complete genome77.7543 %Subject ←→ Query36.4725
NC_011751:1377457Escherichia coli UMN026 chromosome, complete genome78.3517 %Subject ←→ Query36.813
NC_007645:6991163Hahella chejuensis KCTC 2396, complete genome75.0368 %Subject ←→ Query38.1445
NC_009648:2465613*Klebsiella pneumoniae subsp. pneumoniae MGH 78578, complete genome78.2659 %Subject Query50.7802
NC_009648:1487692Klebsiella pneumoniae subsp. pneumoniae MGH 78578, complete genome79.6354 %Subject Query49.6231
NC_009648:3720000*Klebsiella pneumoniae subsp. pneumoniae MGH 78578, complete genome81.0325 %Subject ←→ Query36.7036
NC_009648:3476000Klebsiella pneumoniae subsp. pneumoniae MGH 78578, complete genome83.4283 %Subject ←→ Query37.4593
NC_009648:293052*Klebsiella pneumoniae subsp. pneumoniae MGH 78578, complete genome75.1134 %Subject ←→ Query43.5401
NC_013956:4579759Pantoea ananatis LMG 20103 chromosome, complete genome82.1354 %Subject ←→ Query34.8158
NC_014562:1698253Pantoea vagans C9-1 chromosome, complete genome77.7696 %Subject ←→ Query33.9839
NC_014562:1935088Pantoea vagans C9-1 chromosome, complete genome77.2304 %Subject ←→ Query30.3988
NC_014561:153143Pantoea vagans C9-1 plasmid pPag1, complete sequence77.3101 %Subject ←→ Query28.1767
NC_012917:4646491Pectobacterium carotovorum subsp. carotovorum PC1, complete genome77.0864 %Subject ←→ Query32.6958
NC_012917:4328463Pectobacterium carotovorum subsp. carotovorum PC1, complete genome75.4351 %Subject ←→ Query31.405
NC_012917:3378759Pectobacterium carotovorum subsp. carotovorum PC1, complete genome75.0031 %Subject ←→ Query31.1132
NC_010067:632683Salmonella enterica subsp. arizonae serovar 62:z4,z23:--, complete82.9013 %Subject ←→ Query35.8098
NC_010067:3753971Salmonella enterica subsp. arizonae serovar 62:z4,z23:--, complete81.9547 %Subject ←→ Query35.7065
NC_011149:2294500Salmonella enterica subsp. enterica serovar Agona str. SL483,90.8732 %Subject ←→ Query38.0253
NC_011149:2040396Salmonella enterica subsp. enterica serovar Agona str. SL483,78.5172 %Subject ←→ Query37.9381
NC_011149:3930358Salmonella enterica subsp. enterica serovar Agona str. SL483,84.5037 %Subject ←→ Query38.0507
NC_011149:3895921Salmonella enterica subsp. enterica serovar Agona str. SL483,77.0496 %Subject ←→ Query31.5601
NC_006905:3942753Salmonella enterica subsp. enterica serovar Choleraesuis str83.7469 %Subject ←→ Query35.749
NC_006905:2805877*Salmonella enterica subsp. enterica serovar Choleraesuis str79.9449 %Subject ←→ Query39.786
NC_006905:2355290Salmonella enterica subsp. enterica serovar Choleraesuis str93.7224 %Subject ←→ Query37.6094
NC_011083:4020000Salmonella enterica subsp. enterica serovar Heidelberg str. SL476,84.8499 %Subject ←→ Query37.6885
NC_011083:3985618Salmonella enterica subsp. enterica serovar Heidelberg str. SL476,76.9822 %Subject ←→ Query32.4599
NC_011080:2342672Salmonella enterica subsp. enterica serovar Newport str. SL254,93.2077 %Subject ←→ Query37.4165
NC_011080:3976441Salmonella enterica subsp. enterica serovar Newport str. SL254,84.614 %Subject ←→ Query36.5166
NC_011080:2789744*Salmonella enterica subsp. enterica serovar Newport str. SL254,79.519 %Subject ←→ Query36.512
NC_006511:3759550Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC77.4387 %Subject ←→ Query31.1345
NC_006511:3364448*Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC75.2267 %Subject ←→ Query38.4606
NC_006511:682863*Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC90.7353 %Subject ←→ Query36.3874
NC_006511:4119332*Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC77.6961 %Subject ←→ Query35.1897
NC_006511:3794017Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC84.4179 %Subject ←→ Query37.3602
NC_010102:3955479Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7,84.4393 %Subject ←→ Query37.2943
NC_010102:3919999Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7,77.0435 %Subject ←→ Query32.0708
NC_003198:2703013*Salmonella enterica subsp. enterica serovar Typhi str. CT18,80.2482 %Subject ←→ Query38.1505
NC_003198:2297837Salmonella enterica subsp. enterica serovar Typhi str. CT18,93.9614 %Subject ←→ Query37.159
NC_003198:3855157Salmonella enterica subsp. enterica serovar Typhi str. CT18,76.731 %Subject ←→ Query32.5632
NC_003198:3824187Salmonella enterica subsp. enterica serovar Typhi str. CT18,84.3934 %Subject ←→ Query35.4207
NC_003198:3586000*Salmonella enterica subsp. enterica serovar Typhi str. CT18,78.7377 %Subject ←→ Query35.6335
NC_004631:3809678Salmonella enterica subsp. enterica serovar Typhi Ty2, complete84.8223 %Subject ←→ Query36.1376
NC_004631:283289*Salmonella enterica subsp. enterica serovar Typhi Ty2, complete76.1673 %Subject ←→ Query31.6756
NC_004631:3841975Salmonella enterica subsp. enterica serovar Typhi Ty2, complete77.6164 %Subject ←→ Query32.0647
NC_003197:4005857Salmonella typhimurium LT2, complete genome84.4853 %Subject ←→ Query36.3904
NC_003197:3971905Salmonella typhimurium LT2, complete genome77.212 %Subject ←→ Query32.0829
NC_009832:358291Serratia proteamaculans 568, complete genome75.8578 %Subject ←→ Query31.5844
NC_009832:1946401Serratia proteamaculans 568, complete genome79.1115 %Subject ←→ Query35.908
NC_015566:316340Serratia sp. AS12 chromosome, complete genome76.3327 %Subject ←→ Query34.9699
NC_007385:157516Shigella sonnei Ss046 plasmid pSS_046, complete sequence76.3572 %Subject ←→ Query38.0958
NC_007384:1763375Shigella sonnei Ss046, complete genome75.0429 %Subject ←→ Query33.4012
NC_014228:3282500Xenorhabdus nematophila ATCC 19061, complete genome76.3174 %Subject ←→ Query41.4806
NC_008150:1420825*Yersinia pestis Antiqua, complete genome77.3407 %Subject ←→ Query37.0184
NC_005810:4469156Yersinia pestis biovar Microtus str. 91001, complete genome75.6373 %Subject ←→ Query29.5112
NC_005810:1794490*Yersinia pestis biovar Microtus str. 91001, complete genome77.2672 %Subject ←→ Query37.035
NC_003143:4006884Yersinia pestis CO92, complete genome76.8566 %Subject ←→ Query29.6176
NC_003143:2137945*Yersinia pestis CO92, complete genome77.3407 %Subject ←→ Query37.3318
NC_006155:4302826Yersinia pseudotuberculosis IP 32953, complete genome76.201 %Subject ←→ Query30.1556
NC_010634:4234932Yersinia pseudotuberculosis PB1/+, complete genome76.3726 %Subject ←→ Query30.3016
NC_010465:429095Yersinia pseudotuberculosis YPIII, complete genome75.3646 %Subject ←→ Query29.1646