Pre_GI: OUP Neighbours

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Query: NC_004631:283289 Salmonella enterica subsp. enterica serovar Typhi Ty2, complete

D: 31.6756

Host Lineage: Salmonella enterica; Salmonella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This pathogenic strain of Salmonella typhi was isolated in the early 1970s. It contains no multidrug resistance plasmids and has been used for vaccine development. This serovar is a human-specific organism that causes the life-threatening illness Typhoid fever which is acquired by coming into contact with contaminated food or water. Annually, 17 million people are infected, with 600,000 fatalities, mostly in developing countries. It contains multiple fimbrial operons that may be used to create extracellular appendages for attachment and entry into host intestinal epithelial cells. Causes enteric infections. This group of Enterobactericiae have pathogenic characteristics and are one of the most common causes of enteric infections (food poisoning) worldwide. They were named after the scientist Dr. Daniel Salmon who isolated the first organism, Salmonella choleraesuis, from the intestine of a pig. The presence of several pathogenicity islands (PAIs) that encode various virulence factors allows Salmonella spp. to colonize and infect host organisms. There are two important PAIs, Salmonella pathogenicity island 1 and 2 (SPI-1 and SPI-2) that encode two different type III secretion systems for the delivery of effector molecules into the host cell that result in internalization of the bacteria which then leads to systemic spread.

Number of Neighbours: 45




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Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

Subject IslandSubject Host Description Compositional Similarity Proposed Island FlowSubject Island D
NC_004631:2755306Salmonella enterica subsp. enterica serovar Typhi Ty2, complete75.8762 %Subject ←→ Query30.7575
NC_013282:646569Cronobacter turicensis, complete genome77.5429 %Subject ←→ Query30.8062
NC_015566:4205854*Serratia sp. AS12 chromosome, complete genome77.0098 %Subject ←→ Query30.8457
NC_003198:2769449Salmonella enterica subsp. enterica serovar Typhi str. CT18,75.8762 %Subject ←→ Query31.0494
NC_012912:2800884*Dickeya zeae Ech1591, complete genome75.7721 %Subject ←→ Query31.095
NC_015663:4447984Enterobacter aerogenes KCTC 2190 chromosome, complete genome75.386 %Subject ←→ Query31.6444
NC_013282:3719500*Cronobacter turicensis, complete genome76.8811 %Subject ←→ Query31.6817
NC_009832:4136878*Serratia proteamaculans 568, complete genome75.0398 %Subject ←→ Query31.9857
NC_010102:2881714Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7,77.0067 %Subject ←→ Query32.0373
NC_013716:1756545*Citrobacter rodentium ICC168, complete genome76.9148 %Subject ←→ Query33.4286
NC_012912:2285778Dickeya zeae Ech1591, complete genome75.2911 %Subject ←→ Query33.4887
NC_013282:116649*Cronobacter turicensis, complete genome77.0987 %Subject ←→ Query33.8673
NC_010102:283364*Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7,91.0907 %Subject ←→ Query33.8947
NC_002695:4153394*Escherichia coli O157:H7 str. Sakai, complete genome76.5778 %Subject ←→ Query34.7398
NC_013282:3962188*Cronobacter turicensis, complete genome76.8597 %Subject ←→ Query34.8164
NC_012779:3316877Edwardsiella ictaluri 93-146, complete genome76.4461 %Subject ←→ Query34.9445
NC_009778:1902995Enterobacter sakazakii ATCC BAA-894, complete genome75.3707 %Subject ←→ Query35.1593
NC_006511:4119332*Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC77.6562 %Subject ←→ Query35.1897
NC_010694:614985Erwinia tasmaniensis, complete genome75.0429 %Subject ←→ Query35.5876
NC_003198:3586000*Salmonella enterica subsp. enterica serovar Typhi str. CT18,78.6305 %Subject ←→ Query35.6335
NC_006905:3942753Salmonella enterica subsp. enterica serovar Choleraesuis str76.7586 %Subject ←→ Query35.749
NC_004631:685357*Salmonella enterica subsp. enterica serovar Typhi Ty2, complete76.1673 %Subject ←→ Query36.1113
NC_010473:4256000*Escherichia coli str. K-12 substr. DH10B, complete genome75.9712 %Subject ←→ Query36.1868
NC_006511:682863*Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC76.9393 %Subject ←→ Query36.3874
NC_011080:2789744*Salmonella enterica subsp. enterica serovar Newport str. SL254,87.6348 %Subject ←→ Query36.512
NC_009778:3454790Enterobacter sakazakii ATCC BAA-894, complete genome80.3799 %Subject ←→ Query36.7583
NC_008150:1420825*Yersinia pestis Antiqua, complete genome76.731 %Subject ←→ Query37.0184
NC_005810:1794490*Yersinia pestis biovar Microtus str. 91001, complete genome76.4737 %Subject ←→ Query37.035
NC_003198:2297837Salmonella enterica subsp. enterica serovar Typhi str. CT18,75.049 %Subject ←→ Query37.159
NC_003143:2137945*Yersinia pestis CO92, complete genome76.8352 %Subject ←→ Query37.3318
NC_011080:2342672Salmonella enterica subsp. enterica serovar Newport str. SL254,75.1838 %Subject ←→ Query37.4165
NC_014500:2934232*Dickeya dadantii 3937 chromosome, complete genome75.3278 %Subject ←→ Query37.5286
NC_006905:2355290Salmonella enterica subsp. enterica serovar Choleraesuis str75.2512 %Subject ←→ Query37.6094
NC_014500:894136Dickeya dadantii 3937 chromosome, complete genome75.4013 %Subject ←→ Query37.8586
NC_011149:2294500Salmonella enterica subsp. enterica serovar Agona str. SL483,75.2574 %Subject ←→ Query38.0253
NC_010468:4455201*Escherichia coli ATCC 8739, complete genome76.3297 %Subject ←→ Query38.0958
NC_003198:2703013*Salmonella enterica subsp. enterica serovar Typhi str. CT18,88.2476 %Subject ←→ Query38.1505
NC_013716:4824541*Citrobacter rodentium ICC168, complete genome77.1109 %Subject ←→ Query38.2235
NC_006511:3364448*Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC82.2273 %Subject ←→ Query38.4606
NC_013282:1256769Cronobacter turicensis, complete genome78.7714 %Subject ←→ Query38.8742
NC_006905:2805877*Salmonella enterica subsp. enterica serovar Choleraesuis str86.5227 %Subject ←→ Query39.786
NC_013282:3216226*Cronobacter turicensis, complete genome77.5521 %Subject ←→ Query41.2788
NC_013283:113660Cronobacter turicensis plasmid pCTU1, complete sequence76.2132 %Subject Query42.151
NC_009648:293052*Klebsiella pneumoniae subsp. pneumoniae MGH 78578, complete genome76.4032 %Subject Query43.5401
NC_009778:3832000Enterobacter sakazakii ATCC BAA-894, complete genome75.2298 %Subject Query45.4902