Pre_GI: OUP Neighbours

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Query: NC_004631:2755306 Salmonella enterica subsp. enterica serovar Typhi Ty2, complete

D: 30.7575

Host Lineage: Salmonella enterica; Salmonella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This pathogenic strain of Salmonella typhi was isolated in the early 1970s. It contains no multidrug resistance plasmids and has been used for vaccine development. This serovar is a human-specific organism that causes the life-threatening illness Typhoid fever which is acquired by coming into contact with contaminated food or water. Annually, 17 million people are infected, with 600,000 fatalities, mostly in developing countries. It contains multiple fimbrial operons that may be used to create extracellular appendages for attachment and entry into host intestinal epithelial cells. Causes enteric infections. This group of Enterobactericiae have pathogenic characteristics and are one of the most common causes of enteric infections (food poisoning) worldwide. They were named after the scientist Dr. Daniel Salmon who isolated the first organism, Salmonella choleraesuis, from the intestine of a pig. The presence of several pathogenicity islands (PAIs) that encode various virulence factors allows Salmonella spp. to colonize and infect host organisms. There are two important PAIs, Salmonella pathogenicity island 1 and 2 (SPI-1 and SPI-2) that encode two different type III secretion systems for the delivery of effector molecules into the host cell that result in internalization of the bacteria which then leads to systemic spread.

Number of Neighbours: 67




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Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

Subject IslandSubject Host Description Compositional Similarity Proposed Island FlowSubject Island D
NC_012880:913698Dickeya dadantii Ech703, complete genome75.5116 %Subject ←→ Query30.49
NC_015663:1934863Enterobacter aerogenes KCTC 2190 chromosome, complete genome77.4326 %Subject ←→ Query30.6937
NC_013282:646569Cronobacter turicensis, complete genome78.0699 %Subject ←→ Query30.8062
NC_003198:2769449Salmonella enterica subsp. enterica serovar Typhi str. CT18,100 %Subject ←→ Query31.0494
NC_012912:2800884*Dickeya zeae Ech1591, complete genome75.4718 %Subject ←→ Query31.095
NC_006511:3759550Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC77.2089 %Subject ←→ Query31.1345
NC_012917:4328463Pectobacterium carotovorum subsp. carotovorum PC1, complete genome75.0276 %Subject ←→ Query31.405
NC_011149:3895921Salmonella enterica subsp. enterica serovar Agona str. SL483,76.6912 %Subject ←→ Query31.5601
NC_010067:171053Salmonella enterica subsp. arizonae serovar 62:z4,z23:--, complete88.3793 %Subject ←→ Query31.5722
NC_015663:4447984Enterobacter aerogenes KCTC 2190 chromosome, complete genome78.5294 %Subject ←→ Query31.6444
NC_004631:283289*Salmonella enterica subsp. enterica serovar Typhi Ty2, complete75.8762 %Subject ←→ Query31.6756
NC_013282:3719500*Cronobacter turicensis, complete genome80.4841 %Subject ←→ Query31.6817
NC_010102:2881714Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7,93.3915 %Subject ←→ Query32.0373
NC_004631:3841975Salmonella enterica subsp. enterica serovar Typhi Ty2, complete75.867 %Subject ←→ Query32.0647
NC_010102:3919999Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7,77.3162 %Subject ←→ Query32.0708
NC_003197:3971905Salmonella typhimurium LT2, complete genome76.8903 %Subject ←→ Query32.0829
NC_014500:3519722Dickeya dadantii 3937 chromosome, complete genome78.0392 %Subject ←→ Query32.164
NC_012912:1229333Dickeya zeae Ech1591, complete genome76.829 %Subject ←→ Query32.2592
NC_011083:3985618Salmonella enterica subsp. enterica serovar Heidelberg str. SL476,76.7831 %Subject ←→ Query32.4599
NC_003198:3855157Salmonella enterica subsp. enterica serovar Typhi str. CT18,76.0723 %Subject ←→ Query32.5632
NC_012917:4646491Pectobacterium carotovorum subsp. carotovorum PC1, complete genome75.2574 %Subject ←→ Query32.6958
NC_012880:3645304Dickeya dadantii Ech703, complete genome75.6924 %Subject ←→ Query33.3293
NC_013716:1756545*Citrobacter rodentium ICC168, complete genome81.296 %Subject ←→ Query33.4286
NC_010102:283364*Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7,78.174 %Subject ←→ Query33.8947
NC_012912:777592*Dickeya zeae Ech1591, complete genome77.0343 %Subject ←→ Query33.9737
NC_012779:3316877Edwardsiella ictaluri 93-146, complete genome75.8885 %Subject ←→ Query34.9445
NC_009778:1902995Enterobacter sakazakii ATCC BAA-894, complete genome77.7114 %Subject ←→ Query35.1593
NC_003198:3824187Salmonella enterica subsp. enterica serovar Typhi str. CT18,77.2396 %Subject ←→ Query35.4207
NC_010694:614985Erwinia tasmaniensis, complete genome77.7757 %Subject ←→ Query35.5876
NC_010067:3753971Salmonella enterica subsp. arizonae serovar 62:z4,z23:--, complete77.6317 %Subject ←→ Query35.7065
NC_006905:3942753Salmonella enterica subsp. enterica serovar Choleraesuis str79.614 %Subject ←→ Query35.749
NC_010067:632683Salmonella enterica subsp. arizonae serovar 62:z4,z23:--, complete78.6642 %Subject ←→ Query35.8098
NC_012779:2424967*Edwardsiella ictaluri 93-146, complete genome76.7126 %Subject ←→ Query35.992
NC_004631:3809678Salmonella enterica subsp. enterica serovar Typhi Ty2, complete77.1109 %Subject ←→ Query36.1376
NC_006511:682863*Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC76.4859 %Subject ←→ Query36.3874
NC_003197:4005857Salmonella typhimurium LT2, complete genome77.7849 %Subject ←→ Query36.3904
NC_011080:2789744*Salmonella enterica subsp. enterica serovar Newport str. SL254,77.7512 %Subject ←→ Query36.512
NC_011080:3976441Salmonella enterica subsp. enterica serovar Newport str. SL254,78.1587 %Subject ←→ Query36.5166
NC_012880:2778795Dickeya dadantii Ech703, complete genome77.8248 %Subject ←→ Query36.5333
NC_011149:361765Salmonella enterica subsp. enterica serovar Agona str. SL483,82.0925 %Subject ←→ Query36.5643
NC_004547:138500Erwinia carotovora subsp. atroseptica SCRI1043, complete genome75.239 %Subject ←→ Query36.6454
NC_009778:3454790Enterobacter sakazakii ATCC BAA-894, complete genome81.3664 %Subject ←→ Query36.7583
NC_011080:383441Salmonella enterica subsp. enterica serovar Newport str. SL254,81.5778 %Subject ←→ Query37.0114
NC_008150:1420825*Yersinia pestis Antiqua, complete genome76.7433 %Subject ←→ Query37.0184
NC_005810:1794490*Yersinia pestis biovar Microtus str. 91001, complete genome76.6697 %Subject ←→ Query37.035
NC_010102:3955479Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7,78.1005 %Subject ←→ Query37.2943
NC_003143:2137945*Yersinia pestis CO92, complete genome76.7678 %Subject ←→ Query37.3318
NC_006511:3794017Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC76.6391 %Subject ←→ Query37.3602
NC_014500:2934232*Dickeya dadantii 3937 chromosome, complete genome77.3805 %Subject ←→ Query37.5286
NC_011083:4020000Salmonella enterica subsp. enterica serovar Heidelberg str. SL476,77.886 %Subject ←→ Query37.6885
NC_012912:647369Dickeya zeae Ech1591, complete genome76.008 %Subject ←→ Query37.7391
NC_011149:2040396Salmonella enterica subsp. enterica serovar Agona str. SL483,76.8842 %Subject ←→ Query37.9381
NC_014500:1646854*Dickeya dadantii 3937 chromosome, complete genome78.0729 %Subject ←→ Query37.9513
NC_011149:2294500Salmonella enterica subsp. enterica serovar Agona str. SL483,75.1042 %Subject ←→ Query38.0253
NC_011149:3930358Salmonella enterica subsp. enterica serovar Agona str. SL483,77.6011 %Subject ←→ Query38.0507
NC_003198:2703013*Salmonella enterica subsp. enterica serovar Typhi str. CT18,76.8627 %Subject ←→ Query38.1505
NC_013716:4824541*Citrobacter rodentium ICC168, complete genome75.9528 %Subject ←→ Query38.2235
NC_006511:3364448*Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC78.3364 %Subject ←→ Query38.4606
NC_013282:1256769Cronobacter turicensis, complete genome79.6783 %Subject ←→ Query38.8742
NC_011080:3941909Salmonella enterica subsp. enterica serovar Newport str. SL254,77.3131 %Subject ←→ Query39.4334
NC_006905:2805877*Salmonella enterica subsp. enterica serovar Choleraesuis str77.8891 %Subject ←→ Query39.786
NC_013282:3216226*Cronobacter turicensis, complete genome78.4589 %Subject Query41.2788
NC_013508:2130681*Edwardsiella tarda EIB202, complete genome75.9436 %Subject Query42.2435
NC_009648:293052*Klebsiella pneumoniae subsp. pneumoniae MGH 78578, complete genome81.2194 %Subject Query43.5401
NC_013508:2356865*Edwardsiella tarda EIB202, complete genome75.3217 %Subject Query44.5077
NC_009778:3832000Enterobacter sakazakii ATCC BAA-894, complete genome75.095 %Subject Query45.4902
NC_009778:1141716Enterobacter sakazakii ATCC BAA-894, complete genome75.4963 %Subject Query48.5924