Pre_GI: OUP Neighbours

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Query: NC_004603:1464000 Vibrio parahaemolyticus RIMD 2210633 chromosome I, complete

D: 31.3716

Host Lineage: Vibrio parahaemolyticus; Vibrio; Vibrionaceae; Vibrionales; Proteobacteria; Bacteria

General Information: This is a clinical strain isolated in 1996 in Osaka, Japan. It contains a type III secretion system which may enable colonization and penetration of the host intestinal epithelial layer, and possibly lead to septicemia. The genome contains multipe chromosomal rearrangements as compared to Vibrio cholerae. The organism also produces a hemolysin (thermostable direct hemolysin - TDH) that is particular to Vibrio parahaemolyticus. This genus is abundant in marine or freshwater environments such as estuaries, brackish ponds, or coastal areas; regions that provide an important reservoir for the organism in between outbreaks of the disease. Vibrio can affect shellfish, finfish, and other marine animals and a number of species are pathogenic for humans. This species causes food poisoning (gastroenteritis) in countries that have elevated levels of seafood consumption such as Japan.

Number of Neighbours: 8




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Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

Subject IslandSubject Host Description Compositional Similarity Proposed Island FlowSubject Island D
NC_003210:721824Listeria monocytogenes EGD-e, complete genome76.2868 %Subject ←→ Query22.1346
NC_002973:730942Listeria monocytogenes str. 4b F2365, complete genome75.8425 %Subject ←→ Query22.6302
NC_004668:3118500Enterococcus faecalis V583, complete genome75.288 %Subject ←→ Query28.4525
NC_004459:1794540*Vibrio vulnificus CMCP6 chromosome I, complete sequence75.8425 %Subject ←→ Query31.6148
NC_005139:2731623*Vibrio vulnificus YJ016 chromosome I, complete sequence77.5521 %Subject ←→ Query31.989
NC_015276:2023663Marinomonas mediterranea MMB-1 chromosome, complete genome76.201 %Subject ←→ Query34.0303
NC_010554:2646806Proteus mirabilis HI4320, complete genome76.3664 %Subject ←→ Query35.3988
NC_004459:1679335*Vibrio vulnificus CMCP6 chromosome I, complete sequence78.5172 %Subject ←→ Query35.7874