Pre_GI: OUP Neighbours

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Query: NC_004556:1 Xylella fastidiosa Temecula1, complete genome

D: 37.6064

Host Lineage: Xylella fastidiosa; Xylella; Xanthomonadaceae; Xanthomonadales; Proteobacteria; Bacteria

General Information: This strain was isolated in 1998 from a naturally infected Californian, USA grapevine. This organism was first identified in 1993 as the causal agent of citrus variegated chlorosis, a disease that affects varieties of sweet oranges. Other strains of this species cause a range of diseases in mulberry, pear, almond, elm, sycamore, oak, maple, pecan and coffee which collectively result in multimillion dollar devastation of economically important plants. It does not contain a type III secretion system, but possesses genes for a type II secretion system for export of exoenzymes that degrade the plant cell wall and allow the bacterium to colonize the plant xylem. The cell produces an exopolysaccharide that is similar to the xanthan gum produced by Xanthomonas campestris pv. campestris.

Number of Neighbours: 66

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Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

Subject IslandSubject Host Description Compositional Similarity Proposed Island FlowSubject Island D
NC_005966:159232*Acinetobacter sp. ADP1, complete genome75.8977 %Subject Query21.8081
NC_005955:841781*Bartonella quintana str. Toulouse, complete genome75.1409 %Subject Query23.0636
NC_010611:797351Acinetobacter baumannii ACICU, complete genome76.0447 %Subject Query23.2125
NC_014259:3369000Acinetobacter sp. DR1 chromosome, complete genome75.6127 %Subject Query23.5753
NC_005956:1221352*Bartonella henselae str. Houston-1, complete genome75.9651 %Subject Query23.6912
NC_005955:1540838Bartonella quintana str. Toulouse, complete genome75.7567 %Subject Query24.7325
NC_009085:893601Acinetobacter baumannii ATCC 17978, complete genome76.3297 %Subject Query24.927
NC_005955:1029435*Bartonella quintana str. Toulouse, complete genome76.7249 %Subject Query25.1664
NC_009085:131000*Acinetobacter baumannii ATCC 17978, complete genome75.9467 %Subject Query25.9332
NC_015637:891842Vibrio anguillarum 775 chromosome chromosome II, complete sequence77.0006 %Subject Query26.5351
NC_015222:2475792*Nitrosomonas sp. AL212 chromosome, complete genome77.1078 %Subject Query26.7854
NC_013166:784339Kangiella koreensis DSM 16069, complete genome75.1532 %Subject Query26.7966
NC_015731:1731896Nitrosomonas sp. Is79A3 chromosome, complete genome75.7353 %Subject Query27.058
NC_010611:154307*Acinetobacter baumannii ACICU, complete genome76.2745 %Subject Query27.2606
NC_015731:402280Nitrosomonas sp. Is79A3 chromosome, complete genome75.2451 %Subject Query27.2921
NC_015222:523915Nitrosomonas sp. AL212 chromosome, complete genome75.0123 %Subject Query27.4514
NC_014259:3984568*Acinetobacter sp. DR1 chromosome, complete genome78.1005 %Subject ←→ Query27.6436
NC_015222:1492500Nitrosomonas sp. AL212 chromosome, complete genome75.6281 %Subject ←→ Query27.6569
NC_008150:4561633*Yersinia pestis Antiqua, complete genome76.9976 %Subject ←→ Query28.4594
NC_015224:1641819*Yersinia enterocolitica subsp. palearctica 105.5R(r) chromosome,75.7721 %Subject ←→ Query28.5984
NC_010465:3958766Yersinia pseudotuberculosis YPIII, complete genome76.3358 %Subject ←→ Query28.7816
NC_010531:708049Polynucleobacter necessarius STIR1, complete genome77.8891 %Subject ←→ Query28.9112
NC_015222:2683056Nitrosomonas sp. AL212 chromosome, complete genome76.0631 %Subject ←→ Query28.941
NC_010410:3777076*Acinetobacter baumannii AYE, complete genome76.4706 %Subject ←→ Query29.0441
NC_015731:990000*Nitrosomonas sp. Is79A3 chromosome, complete genome75.1716 %Subject ←→ Query29.1132
NC_004088:4116676Yersinia pestis KIM, complete genome76.3113 %Subject ←→ Query29.2173
NC_010554:1871000Proteus mirabilis HI4320, complete genome77.0864 %Subject ←→ Query29.2221
NC_003143:483395*Yersinia pestis CO92, complete genome77.0037 %Subject ←→ Query29.2984
NC_006155:652500Yersinia pseudotuberculosis IP 32953, complete genome75.4075 %Subject ←→ Query29.7179
NC_005810:4224500Yersinia pestis biovar Microtus str. 91001, complete genome76.4645 %Subject ←→ Query29.8821
NC_008149:402599*Yersinia pestis Nepal516, complete genome77.2243 %Subject ←→ Query30.0082
NC_015731:3077842Nitrosomonas sp. Is79A3 chromosome, complete genome77.595 %Subject ←→ Query30.0354
NC_006155:713174*Yersinia pseudotuberculosis IP 32953, complete genome77.8676 %Subject ←→ Query30.0948
NC_009654:2309365*Marinomonas sp. MWYL1, complete genome75.1991 %Subject ←→ Query30.338
NC_009052:1211989*Shewanella baltica OS155, complete genome75.5944 %Subject ←→ Query30.5674
NC_010159:809663Yersinia pestis Angola, complete genome76.7188 %Subject ←→ Query30.5995
NC_013198:394000*Lactobacillus rhamnosus GG, complete genome76.1949 %Subject ←→ Query31.056
NC_012214:1588573Erwinia pyrifoliae Ep1/96, complete genome75.527 %Subject ←→ Query31.3445
NC_015581:771482*Thioalkalimicrobium cyclicum ALM1 chromosome, complete genome76.8536 %Subject ←→ Query31.8014
NC_008322:3585601*Shewanella sp. MR-7, complete genome75.9865 %Subject ←→ Query32.0176
NC_012917:2971702Pectobacterium carotovorum subsp. carotovorum PC1, complete genome76.7371 %Subject ←→ Query32.0937
NC_008149:1842500*Yersinia pestis Nepal516, complete genome75.0766 %Subject ←→ Query32.1465
NC_010634:635362*Yersinia pseudotuberculosis PB1/+, complete genome75.2819 %Subject ←→ Query32.3173
NC_008150:1705152*Yersinia pestis Antiqua, complete genome75.0643 %Subject ←→ Query32.6597
NC_006155:2893802Yersinia pseudotuberculosis IP 32953, complete genome75.5239 %Subject ←→ Query32.886
NC_005810:754340Yersinia pestis biovar Microtus str. 91001, complete genome75.4013 %Subject ←→ Query33.2368
NC_010634:1056441Yersinia pseudotuberculosis PB1/+, complete genome75.3615 %Subject ←→ Query33.4088
NC_005810:2180303*Yersinia pestis biovar Microtus str. 91001, complete genome76.3879 %Subject ←→ Query33.5745
NC_006155:2461262*Yersinia pseudotuberculosis IP 32953, complete genome76.4859 %Subject ←→ Query34.0957
NC_010634:2376245*Yersinia pseudotuberculosis PB1/+, complete genome75.0153 %Subject ←→ Query34.4786
NC_002488:1Xylella fastidiosa 9a5c, complete genome92.7206 %Subject ←→ Query34.5604
NC_015224:3225000*Yersinia enterocolitica subsp. palearctica 105.5R(r) chromosome,77.0037 %Subject ←→ Query35.2572
NC_005139:305420Vibrio vulnificus YJ016 chromosome I, complete sequence75.6036 %Subject ←→ Query35.5808
NC_012691:2097287*Tolumonas auensis DSM 9187, complete genome75.242 %Subject ←→ Query35.9123
NC_015224:1391088Yersinia enterocolitica subsp. palearctica 105.5R(r) chromosome,75.049 %Subject ←→ Query36.0736
NC_010577:1Xylella fastidiosa M23, complete genome98.4835 %Subject ←→ Query37.1778
NC_006370:847204Photobacterium profundum SS9 chromosome 1, complete sequence77.4326 %Subject ←→ Query37.8101
NC_006155:1191307Yersinia pseudotuberculosis IP 32953, complete genome75.3493 %Subject ←→ Query38.0676
NC_005810:872672Yersinia pestis biovar Microtus str. 91001, complete genome75.6219 %Subject ←→ Query38.2167
NC_004547:1600900Erwinia carotovora subsp. atroseptica SCRI1043, complete genome75.8915 %Subject ←→ Query39.6404
NC_015567:1660462Serratia sp. AS9 chromosome, complete genome76.1979 %Subject ←→ Query42.6158
NC_015566:1659288Serratia sp. AS12 chromosome, complete genome75.9896 %Subject ←→ Query44.7005
NC_013421:3279499Pectobacterium wasabiae WPP163, complete genome76.0509 %Subject ←→ Query44.7246
NC_012917:1506083Pectobacterium carotovorum subsp. carotovorum PC1, complete genome76.5931 %Subject ←→ Query45.1848
NC_009832:1719149Serratia proteamaculans 568, complete genome75.8119 %Subject Query48.0067
NC_008700:2701500*Shewanella amazonensis SB2B, complete genome75.0827 %Subject Query49.9286