Pre_GI: OUP Neighbours

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Query: NC_004547:667988 Erwinia carotovora subsp. atroseptica SCRI1043, complete genome

D: 39.9614

Host Lineage: Pectobacterium atrosepticum; Pectobacterium; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This strain (ATCC BAA-672) is a virulent blackleg isolated from the stem of a potato plant. Causative agent for blackleg and soft rot disease in potatoes. Formerly Erwinia, these organisms are plant-specific pathogens that invade the vascular systems of plants. Both Pectobacterium chrysanthemia and Pectobacterium carotovora cause soft-rot diseases of various plant hosts through degradation of the plant cell walls. Pectobacterium colonize the intercellular spaces of plant cells and deliver potent effector molecules (Avr - avirulence) through a type III secretion system (Hrp - hypersensitive response and pathogenicity). Avr proteins control host-bacterium interactions, including host range. Expression of the plant cell-wall-degrading enzymes is controlled through a quorum-sensing mechanism that quantifies the number of Pectobacterium bacteria through measurement of the concentration of small molecules (acyl homoserine lactones) produced by Pectobacterium. Pectobacterium atrosepticum is an environmentally widespread organism that causes blackleg and soft rot disease in potatoes. This organism produces pectolytic enzymes that destroy plant tissue and allow the bacteria to spread.

Number of Neighbours: 59

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Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

Subject IslandSubject Host Description Compositional Similarity Proposed Island FlowSubject Island D
NC_010498:1210145Escherichia coli SMS-3-5, complete genome75.6005 %Subject Query26.7023
NC_012880:2480000Dickeya dadantii Ech703, complete genome78.2138 %Subject ←→ Query30.1678
NC_015968:204969*Enterobacter asburiae LF7a chromosome, complete genome75.5668 %Subject ←→ Query30.2205
NC_004757:2657490*Nitrosomonas europaea ATCC 19718, complete genome76.0601 %Subject ←→ Query30.3928
NC_015663:1934863Enterobacter aerogenes KCTC 2190 chromosome, complete genome76.1673 %Subject ←→ Query30.6937
NC_014394:1989418Gallionella capsiferriformans ES-2 chromosome, complete genome75.7751 %Subject ←→ Query30.8031
NC_014394:1815638*Gallionella capsiferriformans ES-2 chromosome, complete genome75.6311 %Subject ←→ Query30.8123
NC_012880:1127997*Dickeya dadantii Ech703, complete genome78.8235 %Subject ←→ Query30.9614
NC_014394:3114648*Gallionella capsiferriformans ES-2 chromosome, complete genome76.2623 %Subject ←→ Query31.0387
NC_012912:2800884*Dickeya zeae Ech1591, complete genome78.5876 %Subject ←→ Query31.095
NC_012917:3378759Pectobacterium carotovorum subsp. carotovorum PC1, complete genome77.4969 %Subject ←→ Query31.1132
NC_015663:1902344*Enterobacter aerogenes KCTC 2190 chromosome, complete genome75.4013 %Subject ←→ Query31.1284
NC_012917:4328463Pectobacterium carotovorum subsp. carotovorum PC1, complete genome79.9449 %Subject ←→ Query31.405
NC_012912:1229333Dickeya zeae Ech1591, complete genome77.837 %Subject ←→ Query32.2592
NC_012880:3915500*Dickeya dadantii Ech703, complete genome75.3248 %Subject ←→ Query32.55
NC_013421:1954915*Pectobacterium wasabiae WPP163, complete genome77.8339 %Subject ←→ Query32.6483
NC_013592:3397304Dickeya dadantii Ech586, complete genome77.7849 %Subject ←→ Query32.6808
NC_012917:4646491Pectobacterium carotovorum subsp. carotovorum PC1, complete genome77.019 %Subject ←→ Query32.6958
NC_014394:1658357*Gallionella capsiferriformans ES-2 chromosome, complete genome75.9222 %Subject ←→ Query32.7274
NC_012880:3645304Dickeya dadantii Ech703, complete genome77.4479 %Subject ←→ Query33.3293
NC_013716:1756545*Citrobacter rodentium ICC168, complete genome75.3799 %Subject ←→ Query33.4286
NC_014394:1594071Gallionella capsiferriformans ES-2 chromosome, complete genome76.8045 %Subject ←→ Query33.463
NC_012779:1966205Edwardsiella ictaluri 93-146, complete genome75.3799 %Subject ←→ Query33.5421
NC_013421:3752619*Pectobacterium wasabiae WPP163, complete genome78.3272 %Subject ←→ Query33.6393
NC_012912:777592*Dickeya zeae Ech1591, complete genome78.557 %Subject ←→ Query33.9737
NC_014394:1325616Gallionella capsiferriformans ES-2 chromosome, complete genome76.0815 %Subject ←→ Query34.0576
NC_014394:2111985*Gallionella capsiferriformans ES-2 chromosome, complete genome76.826 %Subject ←→ Query34.1906
NC_014562:1883517*Pantoea vagans C9-1 chromosome, complete genome75.0888 %Subject ←→ Query34.2182
NC_013592:3618248*Dickeya dadantii Ech586, complete genome78.3027 %Subject ←→ Query34.4581
NC_004547:843475*Erwinia carotovora subsp. atroseptica SCRI1043, complete genome77.2947 %Subject ←→ Query34.6881
NC_009138:1843998*Herminiimonas arsenicoxydans, complete genome77.0129 %Subject ←→ Query34.9668
NC_010694:614985Erwinia tasmaniensis, complete genome77.2273 %Subject ←→ Query35.5876
NC_013421:1038500Pectobacterium wasabiae WPP163, complete genome79.8713 %Subject ←→ Query35.7825
NC_007645:713930*Hahella chejuensis KCTC 2396, complete genome75.4167 %Subject ←→ Query35.8159
NC_013421:1545386Pectobacterium wasabiae WPP163, complete genome78.4589 %Subject ←→ Query35.9253
NC_012779:2424967*Edwardsiella ictaluri 93-146, complete genome75.9865 %Subject ←→ Query35.992
NC_013421:1143500Pectobacterium wasabiae WPP163, complete genome76.5227 %Subject ←→ Query36.4256
NC_012880:2778795Dickeya dadantii Ech703, complete genome77.5276 %Subject ←→ Query36.5333
NC_004547:138500Erwinia carotovora subsp. atroseptica SCRI1043, complete genome79.4271 %Subject ←→ Query36.6454
NC_009778:3454790Enterobacter sakazakii ATCC BAA-894, complete genome75.2359 %Subject ←→ Query36.7583
NC_008344:1*Nitrosomonas eutropha C91, complete genome75.0123 %Subject ←→ Query36.7971
NC_008150:1420825*Yersinia pestis Antiqua, complete genome77.2855 %Subject ←→ Query37.0184
NC_005810:1794490*Yersinia pestis biovar Microtus str. 91001, complete genome77.2059 %Subject ←→ Query37.035
NC_005773:1135374Pseudomonas syringae pv. phaseolicola 1448A, complete genome76.057 %Subject ←→ Query37.2379
NC_003143:2137945*Yersinia pestis CO92, complete genome77.1569 %Subject ←→ Query37.3318
NC_010694:2189652*Erwinia tasmaniensis, complete genome75.6556 %Subject ←→ Query37.4179
NC_012912:647369Dickeya zeae Ech1591, complete genome76.5196 %Subject ←→ Query37.7391
NC_014500:894136Dickeya dadantii 3937 chromosome, complete genome75.1716 %Subject ←→ Query37.8586
NC_011149:2040396Salmonella enterica subsp. enterica serovar Agona str. SL483,75.0184 %Subject ←→ Query37.9381
NC_014500:1646854*Dickeya dadantii 3937 chromosome, complete genome77.3774 %Subject ←→ Query37.9513
NC_013508:1687432Edwardsiella tarda EIB202, complete genome75.6863 %Subject ←→ Query39.3906
NC_015663:770485*Enterobacter aerogenes KCTC 2190 chromosome, complete genome79.2586 %Subject ←→ Query39.8332
NC_008344:1364142*Nitrosomonas eutropha C91, complete genome75.5637 %Subject ←→ Query40.6814
NC_013282:3216226*Cronobacter turicensis, complete genome75.2206 %Subject ←→ Query41.2788
NC_013508:2130681*Edwardsiella tarda EIB202, complete genome76.1673 %Subject ←→ Query42.2435
NC_007645:4356865Hahella chejuensis KCTC 2396, complete genome75.3523 %Subject ←→ Query43.5129
NC_014500:3175283Dickeya dadantii 3937 chromosome, complete genome75.6587 %Subject ←→ Query44.4588
NC_013508:2356865*Edwardsiella tarda EIB202, complete genome76.1949 %Subject ←→ Query44.5077
NC_012779:2957000Edwardsiella ictaluri 93-146, complete genome76.2255 %Subject ←→ Query46.4521