Pre_GI: OUP Neighbours

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Query: NC_004547:3817656 Erwinia carotovora subsp. atroseptica SCRI1043, complete genome

D: 34.15

Host Lineage: Pectobacterium atrosepticum; Pectobacterium; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This strain (ATCC BAA-672) is a virulent blackleg isolated from the stem of a potato plant. Causative agent for blackleg and soft rot disease in potatoes. Formerly Erwinia, these organisms are plant-specific pathogens that invade the vascular systems of plants. Both Pectobacterium chrysanthemia and Pectobacterium carotovora cause soft-rot diseases of various plant hosts through degradation of the plant cell walls. Pectobacterium colonize the intercellular spaces of plant cells and deliver potent effector molecules (Avr - avirulence) through a type III secretion system (Hrp - hypersensitive response and pathogenicity). Avr proteins control host-bacterium interactions, including host range. Expression of the plant cell-wall-degrading enzymes is controlled through a quorum-sensing mechanism that quantifies the number of Pectobacterium bacteria through measurement of the concentration of small molecules (acyl homoserine lactones) produced by Pectobacterium. Pectobacterium atrosepticum is an environmentally widespread organism that causes blackleg and soft rot disease in potatoes. This organism produces pectolytic enzymes that destroy plant tissue and allow the bacteria to spread.

Number of Neighbours: 40




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Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

Subject IslandSubject Host Description Compositional Similarity Proposed Island FlowSubject Island D
NC_013716:4824541*Citrobacter rodentium ICC168, complete genome76.8413 %Subject ←→ Query38.2235
NC_014500:2525880Dickeya dadantii 3937 chromosome, complete genome75.3585 %Subject ←→ Query30.3147
NC_013592:2160000Dickeya dadantii Ech586, complete genome77.6256 %Subject ←→ Query33.4874
NC_013592:1424560Dickeya dadantii Ech586, complete genome78.1985 %Subject ←→ Query41.2418
NC_012912:2285778Dickeya zeae Ech1591, complete genome77.1844 %Subject ←→ Query33.4887
NC_012912:2174183Dickeya zeae Ech1591, complete genome76.4461 %Subject ←→ Query33.679
NC_012779:996879Edwardsiella ictaluri 93-146, complete genome76.4522 %Subject ←→ Query39.7678
NC_012779:3316877Edwardsiella ictaluri 93-146, complete genome77.0956 %Subject ←→ Query34.9445
NC_012779:3176820*Edwardsiella ictaluri 93-146, complete genome76.3266 %Subject ←→ Query39.7546
NC_012779:305969Edwardsiella ictaluri 93-146, complete genome77.3192 %Subject ←→ Query39.836
NC_014121:1822895Enterobacter cloacae subsp. cloacae ATCC 13047 chromosome, complete77.7757 %Subject ←→ Query40.59
NC_013961:3083816Erwinia amylovora, complete genome76.1765 %Subject ←→ Query36.2172
NC_010694:3055403Erwinia tasmaniensis, complete genome75.3707 %Subject ←→ Query35.0644
NC_010694:962383Erwinia tasmaniensis, complete genome75.9743 %Subject ←→ Query30.0928
NC_008563:3119284Escherichia coli APEC O1, complete genome75.7384 %Subject ←→ Query31.9127
NC_010468:4455201*Escherichia coli ATCC 8739, complete genome75.2696 %Subject ←→ Query38.0958
NC_004431:1352906Escherichia coli CFT073, complete genome75.8058 %Subject ←→ Query36.4239
NC_011750:1931384Escherichia coli IAI39 chromosome, complete genome75.4075 %Subject ←→ Query37.6581
NC_011751:1377457Escherichia coli UMN026 chromosome, complete genome75.4933 %Subject ←→ Query36.813
NC_009648:2465613*Klebsiella pneumoniae subsp. pneumoniae MGH 78578, complete genome75.9099 %Subject Query50.7802
NC_009648:1487692Klebsiella pneumoniae subsp. pneumoniae MGH 78578, complete genome75.1654 %Subject Query49.6231
NC_009648:3476000Klebsiella pneumoniae subsp. pneumoniae MGH 78578, complete genome77.0527 %Subject ←→ Query37.4593
NC_013956:4579759Pantoea ananatis LMG 20103 chromosome, complete genome76.7831 %Subject ←→ Query34.8158
NC_011149:2294500Salmonella enterica subsp. enterica serovar Agona str. SL483,76.7096 %Subject ←→ Query38.0253
NC_011149:2040396Salmonella enterica subsp. enterica serovar Agona str. SL483,75.095 %Subject ←→ Query37.9381
NC_006905:2805877*Salmonella enterica subsp. enterica serovar Choleraesuis str77.3438 %Subject ←→ Query39.786
NC_006905:2355290Salmonella enterica subsp. enterica serovar Choleraesuis str78.0944 %Subject ←→ Query37.6094
NC_011080:2789744*Salmonella enterica subsp. enterica serovar Newport str. SL254,77.0098 %Subject ←→ Query36.512
NC_011080:2342672Salmonella enterica subsp. enterica serovar Newport str. SL254,77.6287 %Subject ←→ Query37.4165
NC_006511:682863*Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC77.2212 %Subject ←→ Query36.3874
NC_006511:4119332*Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC77.4418 %Subject ←→ Query35.1897
NC_003198:3586000*Salmonella enterica subsp. enterica serovar Typhi str. CT18,77.307 %Subject ←→ Query35.6335
NC_003198:2703013*Salmonella enterica subsp. enterica serovar Typhi str. CT18,77.0098 %Subject ←→ Query38.1505
NC_003198:2297837Salmonella enterica subsp. enterica serovar Typhi str. CT18,78.0086 %Subject ←→ Query37.159
NC_004631:685357*Salmonella enterica subsp. enterica serovar Typhi Ty2, complete78.9124 %Subject ←→ Query36.1113
NC_009832:358291Serratia proteamaculans 568, complete genome75.0092 %Subject ←→ Query31.5844
NC_009832:1946401Serratia proteamaculans 568, complete genome76.0876 %Subject ←→ Query35.908
NC_015566:4662171Serratia sp. AS12 chromosome, complete genome75.1103 %Subject ←→ Query41.8855
NC_015566:316340Serratia sp. AS12 chromosome, complete genome75.1164 %Subject ←→ Query34.9699
NC_010634:4234932Yersinia pseudotuberculosis PB1/+, complete genome75.0521 %Subject ←→ Query30.3016