Pre_GI: OUP Neighbours

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Query: NC_004347:3028000 Shewanella oneidensis MR-1, complete genome

D: 29.3045

Host Lineage: Shewanella oneidensis; Shewanella; Shewanellaceae; Alteromonadales; Proteobacteria; Bacteria

General Information: This strain was isolated from Oneida lake in New York, USA. Potential bioremediation organism. This genus includes species that inhabit a wide range of environments and are capable of utilizing a wide variety of electron acceptors during anaerobic respiration including some insoluble metal oxides while using very few carbon sources such as lactate or acetate. This group of organisms have been studied extensively for their electron transport systems. This organism is a facultative anaerobe that is capable of using a wide variety of terminal electron acceptors during anaerobic respiration which may make it valuable for bioremediation. Since the bacteria can reduce chromium and uranium from the liquid phase to form insoluble compounds, they may be used to eliminate these two environmental pollutants from water.

Number of Neighbours: 24




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Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

Subject IslandSubject Host Description Compositional Similarity Proposed Island FlowSubject Island D
NC_015497:3614817Glaciecola agarilytica 4H-3-7+YE-5 chromosome, complete genome83.0515 %Subject ←→ Query26.8361
NC_015497:3794000Glaciecola agarilytica 4H-3-7+YE-5 chromosome, complete genome81.6207 %Subject ←→ Query26.2889
NC_009052:3229775Shewanella baltica OS155, complete genome80.6342 %Subject ←→ Query27.5596
NC_004347:4211241*Shewanella oneidensis MR-1, complete genome80.4105 %Subject ←→ Query26.7814
NC_009052:71058Shewanella baltica OS155, complete genome80.3186 %Subject ←→ Query28.9961
NC_008577:3485878Shewanella sp. ANA-3 chromosome 1, complete sequence79.4056 %Subject ←→ Query28.3804
NC_012968:435532Methylotenera mobilis JLW8, complete genome79.0411 %Subject ←→ Query29.6632
NC_009052:1394000*Shewanella baltica OS155, complete genome78.6857 %Subject ←→ Query28.5263
NC_008321:458811Shewanella sp. MR-4, complete genome78.269 %Subject ←→ Query31.5836
NC_008321:3232000Shewanella sp. MR-4, complete genome77.8891 %Subject ←→ Query30.7332
NC_008322:1708631*Shewanella sp. MR-7, complete genome77.6134 %Subject ←→ Query33.7062
NC_008321:1636148*Shewanella sp. MR-4, complete genome77.5184 %Subject ←→ Query33.2895
NC_008577:1690946*Shewanella sp. ANA-3 chromosome 1, complete sequence77.3254 %Subject ←→ Query34.9418
NC_009997:4091371Shewanella baltica OS195, complete genome77.1722 %Subject ←→ Query29.1038
NC_006370:166000Photobacterium profundum SS9 chromosome 1, complete sequence76.7984 %Subject ←→ Query28.1736
NC_008577:4907497Shewanella sp. ANA-3 chromosome 1, complete sequence76.2561 %Subject ←→ Query33.4058
NC_008577:2910383*Shewanella sp. ANA-3 chromosome 1, complete sequence76.1918 %Subject ←→ Query31.1953
NC_009052:144619*Shewanella baltica OS155, complete genome76.1458 %Subject ←→ Query27.7085
NC_008321:4631866Shewanella sp. MR-4, complete genome76.0202 %Subject ←→ Query32.8275
NC_008321:3189974Shewanella sp. MR-4, complete genome75.8548 %Subject ←→ Query29.9459
NC_008322:3758500Shewanella sp. MR-7, complete genome75.8333 %Subject ←→ Query34.6053
NC_009654:615504*Marinomonas sp. MWYL1, complete genome75.8333 %Subject ←→ Query31.8258
NC_000907:1568867Haemophilus influenzae Rd KW20, complete genome75.7721 %Subject ←→ Query34.7841
NC_008321:2190000Shewanella sp. MR-4, complete genome75.7659 %Subject ←→ Query30.7271