Pre_GI: OUP Neighbours

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Query: NC_004347:1038253 Shewanella oneidensis MR-1, complete genome

D: 44.6957

Host Lineage: Shewanella oneidensis; Shewanella; Shewanellaceae; Alteromonadales; Proteobacteria; Bacteria

General Information: This strain was isolated from Oneida lake in New York, USA. Potential bioremediation organism. This genus includes species that inhabit a wide range of environments and are capable of utilizing a wide variety of electron acceptors during anaerobic respiration including some insoluble metal oxides while using very few carbon sources such as lactate or acetate. This group of organisms have been studied extensively for their electron transport systems. This organism is a facultative anaerobe that is capable of using a wide variety of terminal electron acceptors during anaerobic respiration which may make it valuable for bioremediation. Since the bacteria can reduce chromium and uranium from the liquid phase to form insoluble compounds, they may be used to eliminate these two environmental pollutants from water.

Number of Neighbours: 8




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Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

Subject IslandSubject Host Description Compositional Similarity Proposed Island FlowSubject Island D
NC_014733:2095996*Methylovorus sp. MP688 chromosome, complete genome75.2911 %Subject Query27.7967
NC_015424:2462522Aeromonas veronii B565 chromosome, complete genome76.3511 %Subject Query29.113
NC_008700:3927896Shewanella amazonensis SB2B, complete genome75.3156 %Subject Query30.2327
NC_009092:2644164Shewanella loihica PV-4, complete genome75.2819 %Subject ←→ Query41.587
NC_015424:2316228Aeromonas veronii B565 chromosome, complete genome76.9087 %Subject ←→ Query41.6332
NC_015424:2357600*Aeromonas veronii B565 chromosome, complete genome77.2028 %Subject ←→ Query42.5888
NC_009348:4135002Aeromonas salmonicida subsp. salmonicida A449, complete genome77.1936 %Subject ←→ Query42.9608
NC_015424:3520783Aeromonas veronii B565 chromosome, complete genome75.3431 %Subject ←→ Query43.6942