Pre_GI: OUP Neighbours

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Query: NC_003198:3586000 Salmonella enterica subsp. enterica serovar Typhi str. CT18,

D: 35.6335

Host Lineage: Salmonella enterica; Salmonella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: Causes enteric infections. This group of Enterobactericiae have pathogenic characteristics and are one of the most common causes of enteric infections (food poisoning) worldwide. They were named after the scientist Dr. Daniel Salmon who isolated the first organism, Salmonella choleraesuis, from the intestine of a pig. The presence of several pathogenicity islands (PAIs) that encode various virulence factors allows Salmonella spp. to colonize and infect host organisms. There are two important PAIs, Salmonella pathogenicity island 1 and 2 (SPI-1 and SPI-2) that encode two different type III secretion systems for the delivery of effector molecules into the host cell that result in internalization of the bacteria which then leads to systemic spread.

Number of Neighbours: 51




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Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

Subject IslandSubject Host Description Compositional Similarity Proposed Island FlowSubject Island D
NC_015968:204969*Enterobacter asburiae LF7a chromosome, complete genome75.144 %Subject ←→ Query30.2205
NC_013282:646569Cronobacter turicensis, complete genome75.0092 %Subject ←→ Query30.8062
NC_012912:2800884*Dickeya zeae Ech1591, complete genome75.4075 %Subject ←→ Query31.095
NC_012917:3378759Pectobacterium carotovorum subsp. carotovorum PC1, complete genome76.1244 %Subject ←→ Query31.1132
NC_012912:1295653Dickeya zeae Ech1591, complete genome75.3462 %Subject ←→ Query31.554
NC_015663:4447984Enterobacter aerogenes KCTC 2190 chromosome, complete genome75.3768 %Subject ←→ Query31.6444
NC_004631:283289*Salmonella enterica subsp. enterica serovar Typhi Ty2, complete78.6305 %Subject ←→ Query31.6756
NC_013282:3719500*Cronobacter turicensis, complete genome75.3094 %Subject ←→ Query31.6817
NC_014500:3519722Dickeya dadantii 3937 chromosome, complete genome75.3707 %Subject ←→ Query32.164
NC_012912:1229333Dickeya zeae Ech1591, complete genome76.9118 %Subject ←→ Query32.2592
NC_010102:283364*Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7,78.3303 %Subject ←→ Query33.8947
NC_014562:1698253Pantoea vagans C9-1 chromosome, complete genome75.8824 %Subject ←→ Query33.9839
NC_004547:3817656Erwinia carotovora subsp. atroseptica SCRI1043, complete genome77.307 %Subject ←→ Query34.15
NC_014121:1038554Enterobacter cloacae subsp. cloacae ATCC 13047 chromosome, complete75.5392 %Subject ←→ Query34.8127
NC_013282:3962188*Cronobacter turicensis, complete genome80.9865 %Subject ←→ Query34.8164
NC_012779:3316877Edwardsiella ictaluri 93-146, complete genome78.1281 %Subject ←→ Query34.9445
NC_010694:3055403Erwinia tasmaniensis, complete genome75.1961 %Subject ←→ Query35.0644
NC_006511:4119332*Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC92.1262 %Subject ←→ Query35.1897
NC_003198:3824187Salmonella enterica subsp. enterica serovar Typhi str. CT18,75.5453 %Subject ←→ Query35.4207
NC_013716:4728500*Citrobacter rodentium ICC168, complete genome75.5852 %Subject ←→ Query35.4511
NC_010067:3753971Salmonella enterica subsp. arizonae serovar 62:z4,z23:--, complete75.2819 %Subject ←→ Query35.7065
NC_006905:3942753Salmonella enterica subsp. enterica serovar Choleraesuis str77.2028 %Subject ←→ Query35.749
NC_010067:632683Salmonella enterica subsp. arizonae serovar 62:z4,z23:--, complete75.5607 %Subject ←→ Query35.8098
NC_011750:4543135*Escherichia coli IAI39 chromosome, complete genome80.4228 %Subject ←→ Query36.053
NC_004631:685357*Salmonella enterica subsp. enterica serovar Typhi Ty2, complete78.7377 %Subject ←→ Query36.1113
NC_004631:3809678Salmonella enterica subsp. enterica serovar Typhi Ty2, complete75.8578 %Subject ←→ Query36.1376
NC_010473:4256000*Escherichia coli str. K-12 substr. DH10B, complete genome85.1409 %Subject ←→ Query36.1868
NC_006511:682863*Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC78.5662 %Subject ←→ Query36.3874
NC_003197:4005857Salmonella typhimurium LT2, complete genome76.0478 %Subject ←→ Query36.3904
NC_011080:2789744*Salmonella enterica subsp. enterica serovar Newport str. SL254,83.9491 %Subject ←→ Query36.512
NC_011080:3976441Salmonella enterica subsp. enterica serovar Newport str. SL254,75.9988 %Subject ←→ Query36.5166
NC_000913:4159090*Escherichia coli K12, complete genome84.0319 %Subject ←→ Query36.6397
NC_003198:2297837Salmonella enterica subsp. enterica serovar Typhi str. CT18,76.8719 %Subject ←→ Query37.159
NC_010102:3955479Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7,75.2788 %Subject ←→ Query37.2943
NC_006511:3794017Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC75.0735 %Subject ←→ Query37.3602
NC_011080:2342672Salmonella enterica subsp. enterica serovar Newport str. SL254,76.5349 %Subject ←→ Query37.4165
NC_009648:3476000Klebsiella pneumoniae subsp. pneumoniae MGH 78578, complete genome76.6391 %Subject ←→ Query37.4593
NC_006905:2355290Salmonella enterica subsp. enterica serovar Choleraesuis str76.6636 %Subject ←→ Query37.6094
NC_011083:4020000Salmonella enterica subsp. enterica serovar Heidelberg str. SL476,75.9773 %Subject ←→ Query37.6885
NC_011149:2040396Salmonella enterica subsp. enterica serovar Agona str. SL483,75.7598 %Subject ←→ Query37.9381
NC_011149:2294500Salmonella enterica subsp. enterica serovar Agona str. SL483,76.6636 %Subject ←→ Query38.0253
NC_011149:3930358Salmonella enterica subsp. enterica serovar Agona str. SL483,75.4963 %Subject ←→ Query38.0507
CU928160:4248621*Escherichia coli IAI1 chromosome, complete genome83.6336 %Subject ←→ Query38.0654
NC_010468:4455201*Escherichia coli ATCC 8739, complete genome82.8768 %Subject ←→ Query38.0958
NC_003198:2703013*Salmonella enterica subsp. enterica serovar Typhi str. CT18,83.1648 %Subject ←→ Query38.1505
NC_013716:4824541*Citrobacter rodentium ICC168, complete genome78.3701 %Subject ←→ Query38.2235
NC_006511:3364448*Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC78.989 %Subject ←→ Query38.4606
NC_013282:1256769Cronobacter turicensis, complete genome77.3284 %Subject ←→ Query38.8742
NC_006905:2805877*Salmonella enterica subsp. enterica serovar Choleraesuis str82.7635 %Subject ←→ Query39.786
NC_013592:1424560Dickeya dadantii Ech586, complete genome76.1857 %Subject ←→ Query41.2418
NC_013282:3216226*Cronobacter turicensis, complete genome78.0944 %Subject ←→ Query41.2788