Pre_GI: OUP Neighbours

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Query: NC_003198:2703013 Salmonella enterica subsp. enterica serovar Typhi str. CT18,

D: 38.1505

Host Lineage: Salmonella enterica; Salmonella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: Causes enteric infections. This group of Enterobactericiae have pathogenic characteristics and are one of the most common causes of enteric infections (food poisoning) worldwide. They were named after the scientist Dr. Daniel Salmon who isolated the first organism, Salmonella choleraesuis, from the intestine of a pig. The presence of several pathogenicity islands (PAIs) that encode various virulence factors allows Salmonella spp. to colonize and infect host organisms. There are two important PAIs, Salmonella pathogenicity island 1 and 2 (SPI-1 and SPI-2) that encode two different type III secretion systems for the delivery of effector molecules into the host cell that result in internalization of the bacteria which then leads to systemic spread.

Number of Neighbours: 101




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Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

Subject IslandSubject Host Description Compositional Similarity Proposed Island FlowSubject Island D
NC_013716:4824541*Citrobacter rodentium ICC168, complete genome80.4871 %Subject ←→ Query38.2235
NC_013716:1756545*Citrobacter rodentium ICC168, complete genome76.9822 %Subject ←→ Query33.4286
NC_013283:113660Cronobacter turicensis plasmid pCTU1, complete sequence75.5086 %Subject ←→ Query42.151
NC_013282:1256769Cronobacter turicensis, complete genome79.7089 %Subject ←→ Query38.8742
NC_013282:116649*Cronobacter turicensis, complete genome78.6489 %Subject ←→ Query33.8673
NC_013282:646569Cronobacter turicensis, complete genome78.9706 %Subject ←→ Query30.8062
NC_013282:3962188*Cronobacter turicensis, complete genome79.7457 %Subject ←→ Query34.8164
NC_013282:3719500*Cronobacter turicensis, complete genome78.6274 %Subject ←→ Query31.6817
NC_013282:3216226*Cronobacter turicensis, complete genome80.095 %Subject ←→ Query41.2788
NC_014500:2934232*Dickeya dadantii 3937 chromosome, complete genome77.4847 %Subject ←→ Query37.5286
NC_014500:1646854*Dickeya dadantii 3937 chromosome, complete genome76.2531 %Subject ←→ Query37.9513
NC_014500:894136Dickeya dadantii 3937 chromosome, complete genome77.0619 %Subject ←→ Query37.8586
NC_014500:3519722Dickeya dadantii 3937 chromosome, complete genome75.6127 %Subject ←→ Query32.164
NC_014500:3175283Dickeya dadantii 3937 chromosome, complete genome76.3235 %Subject ←→ Query44.4588
NC_013592:1424560Dickeya dadantii Ech586, complete genome76.8627 %Subject ←→ Query41.2418
NC_012880:913698Dickeya dadantii Ech703, complete genome77.0435 %Subject ←→ Query30.49
NC_012880:2778795Dickeya dadantii Ech703, complete genome76.1274 %Subject ←→ Query36.5333
NC_012912:2800884*Dickeya zeae Ech1591, complete genome76.4767 %Subject ←→ Query31.095
NC_012912:2285778Dickeya zeae Ech1591, complete genome76.8107 %Subject ←→ Query33.4887
NC_012912:1295653Dickeya zeae Ech1591, complete genome76.9547 %Subject ←→ Query31.554
NC_012912:1229333Dickeya zeae Ech1591, complete genome77.9442 %Subject ←→ Query32.2592
NC_012912:4737703Dickeya zeae Ech1591, complete genome75.527 %Subject ←→ Query29.5142
NC_012779:610509*Edwardsiella ictaluri 93-146, complete genome75.1379 %Subject ←→ Query37.2815
NC_012779:3316877Edwardsiella ictaluri 93-146, complete genome79.038 %Subject ←→ Query34.9445
NC_012779:3176820*Edwardsiella ictaluri 93-146, complete genome75.3156 %Subject ←→ Query39.7546
NC_012779:3016327Edwardsiella ictaluri 93-146, complete genome76.4277 %Subject ←→ Query37.6194
NC_012779:2586175Edwardsiella ictaluri 93-146, complete genome75.4381 %Subject ←→ Query45.323
NC_012779:2424967*Edwardsiella ictaluri 93-146, complete genome75.6771 %Subject ←→ Query35.992
NC_012779:996879Edwardsiella ictaluri 93-146, complete genome75.288 %Subject ←→ Query39.7678
NC_015663:4447984Enterobacter aerogenes KCTC 2190 chromosome, complete genome76.4951 %Subject ←→ Query31.6444
NC_015968:204969*Enterobacter asburiae LF7a chromosome, complete genome77.7328 %Subject ←→ Query30.2205
NC_015968:4389871Enterobacter asburiae LF7a chromosome, complete genome75.8088 %Subject ←→ Query30.7332
NC_014121:1822895Enterobacter cloacae subsp. cloacae ATCC 13047 chromosome, complete75.9252 %Subject ←→ Query40.59
NC_009778:3454790Enterobacter sakazakii ATCC BAA-894, complete genome79.2279 %Subject ←→ Query36.7583
NC_009778:1902995Enterobacter sakazakii ATCC BAA-894, complete genome76.2286 %Subject ←→ Query35.1593
NC_009778:3832000Enterobacter sakazakii ATCC BAA-894, complete genome75.1685 %Subject ←→ Query45.4902
NC_013961:3083816Erwinia amylovora, complete genome75.6495 %Subject ←→ Query36.2172
NC_004547:3817656Erwinia carotovora subsp. atroseptica SCRI1043, complete genome77.0098 %Subject ←→ Query34.15
NC_010694:614985Erwinia tasmaniensis, complete genome76.4522 %Subject ←→ Query35.5876
NC_010694:3055403Erwinia tasmaniensis, complete genome75.769 %Subject ←→ Query35.0644
NC_010468:4455201*Escherichia coli ATCC 8739, complete genome79.5527 %Subject ←→ Query38.0958
NC_004431:1352906Escherichia coli CFT073, complete genome75.5055 %Subject ←→ Query36.4239
CU928160:4248621*Escherichia coli IAI1 chromosome, complete genome76.8719 %Subject ←→ Query38.0654
NC_011750:1931384Escherichia coli IAI39 chromosome, complete genome75.0521 %Subject ←→ Query37.6581
NC_000913:4159090*Escherichia coli K12, complete genome77.0803 %Subject ←→ Query36.6397
NC_010473:4256000*Escherichia coli str. K-12 substr. DH10B, complete genome79.519 %Subject ←→ Query36.1868
NC_011751:1377457Escherichia coli UMN026 chromosome, complete genome75.8609 %Subject ←→ Query36.813
NC_007645:829500Hahella chejuensis KCTC 2396, complete genome75.0092 %Subject ←→ Query33.1834
NC_007645:6991163Hahella chejuensis KCTC 2396, complete genome75.4504 %Subject ←→ Query38.1445
NC_007645:3870466Hahella chejuensis KCTC 2396, complete genome75.9835 %Subject ←→ Query41.4216
NC_007645:1443296Hahella chejuensis KCTC 2396, complete genome75.3922 %Subject ←→ Query42.0128
NC_009648:1487692Klebsiella pneumoniae subsp. pneumoniae MGH 78578, complete genome76.5441 %Subject Query49.6231
NC_009648:3720000*Klebsiella pneumoniae subsp. pneumoniae MGH 78578, complete genome77.4755 %Subject ←→ Query36.7036
NC_009648:3476000Klebsiella pneumoniae subsp. pneumoniae MGH 78578, complete genome76.9914 %Subject ←→ Query37.4593
NC_009648:293052*Klebsiella pneumoniae subsp. pneumoniae MGH 78578, complete genome76.4154 %Subject ←→ Query43.5401
NC_009648:2465613*Klebsiella pneumoniae subsp. pneumoniae MGH 78578, complete genome75.2849 %Subject Query50.7802
NC_013956:4579759Pantoea ananatis LMG 20103 chromosome, complete genome76.0907 %Subject ←→ Query34.8158
NC_012917:4646491Pectobacterium carotovorum subsp. carotovorum PC1, complete genome75.0061 %Subject ←→ Query32.6958
NC_012917:4328463Pectobacterium carotovorum subsp. carotovorum PC1, complete genome76.2776 %Subject ←→ Query31.405
NC_012917:3378759Pectobacterium carotovorum subsp. carotovorum PC1, complete genome76.4767 %Subject ←→ Query31.1132
NC_010067:632683Salmonella enterica subsp. arizonae serovar 62:z4,z23:--, complete77.4816 %Subject ←→ Query35.8098
NC_010067:3753971Salmonella enterica subsp. arizonae serovar 62:z4,z23:--, complete76.4614 %Subject ←→ Query35.7065
NC_010067:171053Salmonella enterica subsp. arizonae serovar 62:z4,z23:--, complete75.6771 %Subject ←→ Query31.5722
NC_011149:3930358Salmonella enterica subsp. enterica serovar Agona str. SL483,77.4724 %Subject ←→ Query38.0507
NC_011149:3895921Salmonella enterica subsp. enterica serovar Agona str. SL483,75.6618 %Subject ←→ Query31.5601
NC_011149:361765Salmonella enterica subsp. enterica serovar Agona str. SL483,75.7996 %Subject ←→ Query36.5643
NC_011149:2294500Salmonella enterica subsp. enterica serovar Agona str. SL483,79.0686 %Subject ←→ Query38.0253
NC_011149:2040396Salmonella enterica subsp. enterica serovar Agona str. SL483,76.1612 %Subject ←→ Query37.9381
NC_006905:2805877*Salmonella enterica subsp. enterica serovar Choleraesuis str92.3499 %Subject ←→ Query39.786
NC_006905:2355290Salmonella enterica subsp. enterica serovar Choleraesuis str79.2402 %Subject ←→ Query37.6094
NC_006905:3942753Salmonella enterica subsp. enterica serovar Choleraesuis str79.1973 %Subject ←→ Query35.749
NC_011083:4020000Salmonella enterica subsp. enterica serovar Heidelberg str. SL476,78.1556 %Subject ←→ Query37.6885
NC_011083:3985618Salmonella enterica subsp. enterica serovar Heidelberg str. SL476,75.5208 %Subject ←→ Query32.4599
NC_011080:3976441Salmonella enterica subsp. enterica serovar Newport str. SL254,77.5766 %Subject ←→ Query36.5166
NC_011080:383441Salmonella enterica subsp. enterica serovar Newport str. SL254,75.2053 %Subject ←→ Query37.0114
NC_011080:2789744*Salmonella enterica subsp. enterica serovar Newport str. SL254,94.7488 %Subject ←→ Query36.512
NC_011080:2342672Salmonella enterica subsp. enterica serovar Newport str. SL254,79.0441 %Subject ←→ Query37.4165
NC_006511:3364448*Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC82.2825 %Subject ←→ Query38.4606
NC_006511:682863*Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC80.7812 %Subject ←→ Query36.3874
NC_006511:4119332*Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC81.8903 %Subject ←→ Query35.1897
NC_006511:3794017Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC77.7665 %Subject ←→ Query37.3602
NC_006511:3759550Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC75.671 %Subject ←→ Query31.1345
NC_010102:283364*Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7,86.1152 %Subject ←→ Query33.8947
NC_010102:3955479Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7,77.7635 %Subject ←→ Query37.2943
NC_010102:2881714Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7,77.2273 %Subject ←→ Query32.0373
NC_003198:3824187Salmonella enterica subsp. enterica serovar Typhi str. CT18,77.8217 %Subject ←→ Query35.4207
NC_003198:3586000*Salmonella enterica subsp. enterica serovar Typhi str. CT18,83.1648 %Subject ←→ Query35.6335
NC_003198:2769449Salmonella enterica subsp. enterica serovar Typhi str. CT18,76.8627 %Subject ←→ Query31.0494
NC_003198:2297837Salmonella enterica subsp. enterica serovar Typhi str. CT18,79.0993 %Subject ←→ Query37.159
NC_004631:2755306Salmonella enterica subsp. enterica serovar Typhi Ty2, complete76.8627 %Subject ←→ Query30.7575
NC_004631:685357*Salmonella enterica subsp. enterica serovar Typhi Ty2, complete80.2482 %Subject ←→ Query36.1113
NC_004631:3841975Salmonella enterica subsp. enterica serovar Typhi Ty2, complete75.6464 %Subject ←→ Query32.0647
NC_004631:3809678Salmonella enterica subsp. enterica serovar Typhi Ty2, complete78.0545 %Subject ←→ Query36.1376
NC_004631:283289*Salmonella enterica subsp. enterica serovar Typhi Ty2, complete88.2476 %Subject ←→ Query31.6756
NC_003197:4005857Salmonella typhimurium LT2, complete genome77.693 %Subject ←→ Query36.3904
NC_009832:4136878*Serratia proteamaculans 568, complete genome75.7138 %Subject ←→ Query31.9857
NC_009832:1946401Serratia proteamaculans 568, complete genome75.579 %Subject ←→ Query35.908
NC_015566:4205854*Serratia sp. AS12 chromosome, complete genome78.2598 %Subject ←→ Query30.8457
NC_008150:1420825*Yersinia pestis Antiqua, complete genome77.7175 %Subject ←→ Query37.0184
NC_005810:1794490*Yersinia pestis biovar Microtus str. 91001, complete genome77.4663 %Subject ←→ Query37.035
NC_003143:2137945*Yersinia pestis CO92, complete genome77.7053 %Subject ←→ Query37.3318