Pre_GI: OUP Neighbours

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Query: NC_000117:581987 Chlamydia trachomatis D/UW-3/CX, complete genome

D: 26.7145

Host Lineage: Chlamydia trachomatis; Chlamydia; Chlamydiaceae; Chlamydiales; Chlamydiae; Bacteria

General Information: Isolated from the cervix of an asymptomatic female. Opportunistic pathogen. Bacteria belonging to the Chlamydiales group are obligate intracellular parasites of eukaryotic cells. They are found within vertebrates, invertebrate cells, and amoebae hosts. Chlamydiae are one of the commonest causes of sexually transmitted diseases (STDs) and if left untreated may cause infertility in women. They are transmitted by direct contact or aerosols, and can cause various diseases, while also being able to coexist with the host in an apparently asymptomatic state. This species causes infection that leads to blindness and sexually transmitted diseases in humans. There are 15 serovariants that preferentially cause disease in either the eye or the urogenital tract. The trachoma (infection of the mucous membrane of the eyelids) biovars are noninvasive and can cause blinding trachoma (variants A, B, Ba, and C), or sexually transmitted diseases (variants, D, E, F, G, H, I, J, and K). The lymphogranuloma venereum biovars (variants L1, L2, and L3) can cross the epithelial cells of mucous membranes and then travel through the lymphatic system where they multiply within mononuclear phagocytes found within the lymph nodes. This is a trachoma biovar, serovar D strain.

Number of Neighbours: 185

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Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

Subject IslandSubject Host Description Compositional Similarity Proposed Island FlowSubject Island D
NC_006156:685344*Borrelia garinii PBi chromosome linear, complete sequence75.2727 %Subject Query11.7947
NC_006156:271410Borrelia garinii PBi chromosome linear, complete sequence76.7739 %Subject Query13.3694
NC_006156:17637*Borrelia garinii PBi chromosome linear, complete sequence75.2819 %Subject Query13.4728
NC_006156:484951*Borrelia garinii PBi chromosome linear, complete sequence77.4357 %Subject Query14.1993
NC_011565:423000*Candidatus Azobacteroides pseudotrichonymphae genomovar. CFP2,76.8321 %Subject Query14.8863
NC_015921:757776*Borrelia bissettii DN127 chromosome, complete genome75.0245 %Subject Query15.1173
NC_011565:385454*Candidatus Azobacteroides pseudotrichonymphae genomovar. CFP2,76.4001 %Subject Query15.2298
NC_008277:485299*Borrelia afzelii PKo, complete genome78.3701 %Subject Query15.3596
NC_011565:750168*Candidatus Azobacteroides pseudotrichonymphae genomovar. CFP2,76.3664 %Subject Query15.3621
NC_001318:479709*Borrelia burgdorferi B31, complete genome78.2996 %Subject Query15.4122
NC_001318:270488Borrelia burgdorferi B31, complete genome76.5564 %Subject Query15.7952
NC_001318:377039*Borrelia burgdorferi B31, complete genome77.0221 %Subject Query15.8266
NC_008710:621822*Borrelia turicatae 91E135, complete genome75.0888 %Subject Query16.3333
NC_015921:272517Borrelia bissettii DN127 chromosome, complete genome77.1262 %Subject Query16.3448
NC_006156:389152*Borrelia garinii PBi chromosome linear, complete sequence77.0619 %Subject Query16.3634
NC_011565:1054414*Candidatus Azobacteroides pseudotrichonymphae genomovar. CFP2,75.5729 %Subject Query16.3799
NC_015921:481532*Borrelia bissettii DN127 chromosome, complete genome78.4712 %Subject Query16.4642
NC_008277:272741Borrelia afzelii PKo, complete genome76.78 %Subject Query16.54
NC_008710:577696*Borrelia turicatae 91E135, complete genome75.0521 %Subject ←→ Query16.8531
NC_012416:531772*Wolbachia sp. wRi, complete genome75.0521 %Subject ←→ Query16.8926
NC_008710:819389*Borrelia turicatae 91E135, complete genome76.3909 %Subject ←→ Query16.9838
NC_005861:695130Candidatus Protochlamydia amoebophila UWE25, complete genome75.0613 %Subject ←→ Query17.0679
NC_008277:387811*Borrelia afzelii PKo, complete genome77.405 %Subject ←→ Query17.1902
NC_008710:488815*Borrelia turicatae 91E135, complete genome78.4436 %Subject ←→ Query17.3913
NC_008710:79100*Borrelia turicatae 91E135, complete genome75.723 %Subject ←→ Query17.4763
NC_011565:1*Candidatus Azobacteroides pseudotrichonymphae genomovar. CFP2,77.6501 %Subject ←→ Query17.4809
NC_015921:387451*Borrelia bissettii DN127 chromosome, complete genome76.7708 %Subject ←→ Query17.4893
NC_010981:594197*Wolbachia pipientis, complete genome76.345 %Subject ←→ Query17.5118
NC_015499:1403447*Thermodesulfobium narugense DSM 14796 chromosome, complete genome76.4553 %Subject ←→ Query17.6769
NC_008710:277207Borrelia turicatae 91E135, complete genome77.8217 %Subject ←→ Query17.7562
NC_008710:386376*Borrelia turicatae 91E135, complete genome76.1673 %Subject ←→ Query17.759
NC_010673:578474*Borrelia hermsii DAH, complete genome75.3707 %Subject ←→ Query17.8441
NC_008508:1382036Leptospira borgpetersenii serovar Hardjo-bovis L550 chromosome 1,75.9681 %Subject ←→ Query17.8569
NC_008510:1339926Leptospira borgpetersenii serovar Hardjo-bovis JB197 chromosome 1,75.723 %Subject ←→ Query17.8979
NC_011565:69427*Candidatus Azobacteroides pseudotrichonymphae genomovar. CFP2,77.4786 %Subject ←→ Query17.9138
NC_008710:703740*Borrelia turicatae 91E135, complete genome76.9424 %Subject ←→ Query17.9499
NC_015499:352934Thermodesulfobium narugense DSM 14796 chromosome, complete genome75.3401 %Subject ←→ Query18.0569
NC_015499:119200*Thermodesulfobium narugense DSM 14796 chromosome, complete genome77.1783 %Subject ←→ Query18.1895
NC_015499:197945Thermodesulfobium narugense DSM 14796 chromosome, complete genome77.451 %Subject ←→ Query18.1988
NC_015499:1466794*Thermodesulfobium narugense DSM 14796 chromosome, complete genome78.0484 %Subject ←→ Query18.3427
NC_010673:82586*Borrelia hermsii DAH, complete genome77.3101 %Subject ←→ Query18.3487
NC_010673:291679Borrelia hermsii DAH, complete genome78.652 %Subject ←→ Query18.43
NC_008710:108057*Borrelia turicatae 91E135, complete genome76.1826 %Subject ←→ Query18.4329
NC_010673:113133*Borrelia hermsii DAH, complete genome78.6918 %Subject ←→ Query18.5646
NC_010673:388442*Borrelia hermsii DAH, complete genome76.2684 %Subject ←→ Query18.753
NC_008819:1531187*Prochlorococcus marinus str. NATL1A, complete genome75.0368 %Subject ←→ Query18.9236
NC_010673:479552*Borrelia hermsii DAH, complete genome76.921 %Subject ←→ Query18.9402
NC_015499:309394*Thermodesulfobium narugense DSM 14796 chromosome, complete genome76.1765 %Subject ←→ Query19.0095
NC_014934:2339196*Cellulophaga algicola DSM 14237 chromosome, complete genome75.1808 %Subject ←→ Query19.0256
NC_014041:4156059*Zunongwangia profunda SM-A87 chromosome, complete genome75.9865 %Subject ←→ Query19.1026
NC_007335:944175*Prochlorococcus marinus str. NATL2A, complete genome75.288 %Subject ←→ Query19.3829
NC_006156:427358*Borrelia garinii PBi chromosome linear, complete sequence76.2837 %Subject ←→ Query19.445
NC_005861:544280*Candidatus Protochlamydia amoebophila UWE25, complete genome75.7353 %Subject ←→ Query19.4759
NC_010673:703816*Borrelia hermsii DAH, complete genome77.454 %Subject ←→ Query19.609
NC_005042:1480761*Prochlorococcus marinus subsp. marinus str. CCMP1375, complete76.152 %Subject ←→ Query19.739
NC_015499:491423*Thermodesulfobium narugense DSM 14796 chromosome, complete genome76.4461 %Subject ←→ Query19.9125
NC_015499:1640500Thermodesulfobium narugense DSM 14796 chromosome, complete genome76.1336 %Subject ←→ Query20.0642
NC_008277:428926*Borrelia afzelii PKo, complete genome77.4112 %Subject ←→ Query20.2849
NC_015722:4539*Candidatus Midichloria mitochondrii IricVA chromosome, complete77.3039 %Subject ←→ Query20.4604
NC_014774:671695Candidatus Liberibacter solanacearum CLso-ZC1 chromosome, complete80.3401 %Subject ←→ Query20.4767
NC_011661:1143787*Dictyoglomus turgidum DSM 6724, complete genome75.4351 %Subject ←→ Query20.6894
NC_012416:4973*Wolbachia sp. wRi, complete genome76.3327 %Subject ←→ Query20.8103
NC_015722:462450*Candidatus Midichloria mitochondrii IricVA chromosome, complete75.6097 %Subject ←→ Query20.8807
NC_014774:1019273*Candidatus Liberibacter solanacearum CLso-ZC1 chromosome, complete78.1005 %Subject ←→ Query20.9083
NC_010981:1243888*Wolbachia pipientis, complete genome75.9804 %Subject ←→ Query20.9253
NC_015702:2902934Parachlamydia acanthamoebae UV7, complete genome75.4933 %Subject ←→ Query21.0552
NC_011661:961129*Dictyoglomus turgidum DSM 6724, complete genome75.6158 %Subject ←→ Query21.084
NC_002491:1147169*Chlamydophila pneumoniae J138, complete genome81.0784 %Subject ←→ Query21.1941
NC_005042:1552074*Prochlorococcus marinus subsp. marinus str. CCMP1375, complete76.2898 %Subject ←→ Query21.2204
NC_015921:425225*Borrelia bissettii DN127 chromosome, complete genome76.9485 %Subject ←→ Query21.3695
NC_014932:1387818*Bartonella clarridgeiae 73, complete genome75.913 %Subject ←→ Query21.3964
NC_014774:1057856*Candidatus Liberibacter solanacearum CLso-ZC1 chromosome, complete80.3523 %Subject ←→ Query21.4019
NC_015696:220798*Francisella sp. TX077308 chromosome, complete genome75.6036 %Subject ←→ Query21.4406
NC_014932:1084422Bartonella clarridgeiae 73, complete genome76.4216 %Subject ←→ Query21.5217
NC_014774:239865*Candidatus Liberibacter solanacearum CLso-ZC1 chromosome, complete79.3811 %Subject ←→ Query21.6014
NC_002491:156325Chlamydophila pneumoniae J138, complete genome81.9608 %Subject ←→ Query21.6318
NC_015470:831863*Chlamydophila psittaci 6BC chromosome, complete genome80.1685 %Subject ←→ Query21.7656
NC_007899:236715*Chlamydophila felis Fe/C-56, complete genome80.3278 %Subject ←→ Query21.7716
NC_012985:815040*Candidatus Liberibacter asiaticus str. psy62, complete genome77.595 %Subject ←→ Query22.0787
NC_015702:2505633*Parachlamydia acanthamoebae UV7, complete genome76.492 %Subject ←→ Query22.3614
NC_002179:667182Chlamydophila pneumoniae AR39, complete genome81.6238 %Subject ←→ Query22.3837
NC_014932:985882*Bartonella clarridgeiae 73, complete genome77.6072 %Subject ←→ Query22.4135
NC_002978:4973*Wolbachia endosymbiont of Drosophila melanogaster, complete genome76.2224 %Subject ←→ Query22.6225
NC_005861:2120633Candidatus Protochlamydia amoebophila UWE25, complete genome77.4479 %Subject ←→ Query22.6855
NC_005043:1143557*Chlamydophila pneumoniae TW-183, complete genome81.8536 %Subject ←→ Query22.6897
NC_002179:904518*Chlamydophila pneumoniae AR39, complete genome81.2347 %Subject ←→ Query22.7596
NC_003361:914459*Chlamydophila caviae GPIC, complete genome79.0839 %Subject ←→ Query22.8326
NC_015470:715500Chlamydophila psittaci 6BC chromosome, complete genome79.0962 %Subject ←→ Query22.9329
NC_002620:229856Chlamydia muridarum Nigg, complete genome86.1244 %Subject ←→ Query22.9754
NC_000117:350487*Chlamydia trachomatis D/UW-3/CX, complete genome86.2163 %Subject ←→ Query23.097
NC_015744:668665*Chlamydia trachomatis L2c chromosome, complete genome86.0876 %Subject ←→ Query23.173
NC_002179:590000Chlamydophila pneumoniae AR39, complete genome78.8971 %Subject ←→ Query23.2004
NC_010280:673211*Chlamydia trachomatis L2b/UCH-1/proctitis, complete genome86.6054 %Subject ←→ Query23.2125
NC_000922:1147855*Chlamydophila pneumoniae CWL029, complete genome81.1857 %Subject ←→ Query23.2348
NC_012985:465354*Candidatus Liberibacter asiaticus str. psy62, complete genome79.3536 %Subject ←→ Query23.2997
NC_010280:769639*Chlamydia trachomatis L2b/UCH-1/proctitis, complete genome80.9467 %Subject ←→ Query23.5165
NC_007429:356952*Chlamydia trachomatis A/HAR-13, complete genome86.3603 %Subject ←→ Query23.55
NC_005956:152497*Bartonella henselae str. Houston-1, complete genome75.4228 %Subject ←→ Query23.6077
NC_003361:803713*Chlamydophila caviae GPIC, complete genome80.769 %Subject ←→ Query23.6199
NC_008783:671349*Bartonella bacilliformis KC583, complete genome75.8578 %Subject ←→ Query23.7232
NC_004552:235769Chlamydophila abortus S26/3, complete genome79.038 %Subject ←→ Query23.8205
NC_007899:854768Chlamydophila felis Fe/C-56, complete genome82.4112 %Subject ←→ Query23.8375
NC_010287:769600*Chlamydia trachomatis 434/Bu, complete genome80.8793 %Subject ←→ Query23.8874
NC_002179:237854Chlamydophila pneumoniae AR39, complete genome80.9835 %Subject ←→ Query23.9109
NC_011248:23500Borrelia duttonii Ly plasmid pl35, complete sequence75.4136 %Subject ←→ Query23.9695
NC_002620:936869*Chlamydia muridarum Nigg, complete genome90.8854 %Subject ←→ Query23.9786
NC_002620:803696*Chlamydia muridarum Nigg, complete genome81.5043 %Subject ←→ Query23.9786
NC_003361:282778*Chlamydophila caviae GPIC, complete genome80.2911 %Subject ←→ Query24.2434
NC_002620:705075*Chlamydia muridarum Nigg, complete genome84.8683 %Subject ←→ Query24.2668
NC_015470:269296*Chlamydophila psittaci 6BC chromosome, complete genome81.9363 %Subject ←→ Query24.2894
NS_000191:344000*Uncultured Termite group 1 bacterium phylotype Rs-D17, complete76.7739 %Subject ←→ Query24.3819
NC_014655:1038352*Leadbetterella byssophila DSM 17132 chromosome, complete genome75.3401 %Subject ←→ Query24.4498
NC_015744:367142Chlamydia trachomatis L2c chromosome, complete genome82.5827 %Subject ←→ Query24.5587
NC_015744:769907*Chlamydia trachomatis L2c chromosome, complete genome81.008 %Subject ←→ Query24.6413
NC_012846:825341*Bartonella grahamii as4aup, complete genome77.6134 %Subject ←→ Query24.9574
NC_015408:404778*Chlamydophila pecorum E58 chromosome, complete genome85.8149 %Subject ←→ Query24.9818
NC_014804:1856388Thermococcus barophilus MP chromosome, complete genome75.7077 %Subject ←→ Query25.1196
NC_012985:1*Candidatus Liberibacter asiaticus str. psy62, complete genome77.7665 %Subject ←→ Query25.264
NC_015713:2453409*Simkania negevensis Z chromosome gsn.131, complete genome78.9338 %Subject ←→ Query25.3213
NC_005955:1205836*Bartonella quintana str. Toulouse, complete genome77.0741 %Subject ←→ Query25.4317
NC_007798:652317*Neorickettsia sennetsu str. Miyayama, complete genome79.4638 %Subject ←→ Query25.4323
NC_014774:171500*Candidatus Liberibacter solanacearum CLso-ZC1 chromosome, complete75.0643 %Subject ←→ Query25.4631
NC_012785:638000Kosmotoga olearia TBF 19.5.1, complete genome75.4688 %Subject ←→ Query25.4803
NC_014774:1210004*Candidatus Liberibacter solanacearum CLso-ZC1 chromosome, complete76.7862 %Subject ←→ Query25.5169
NC_007798:547800*Neorickettsia sennetsu str. Miyayama, complete genome80.674 %Subject ←→ Query25.5816
NC_005042:513931Prochlorococcus marinus subsp. marinus str. CCMP1375, complete75.4197 %Subject ←→ Query25.6039
NC_007520:407627Thiomicrospira crunogena XCL-2, complete genome76.4277 %Subject ←→ Query25.8025
NC_005955:947500*Bartonella quintana str. Toulouse, complete genome75.7445 %Subject ←→ Query25.8177
NC_014774:1120383*Candidatus Liberibacter solanacearum CLso-ZC1 chromosome, complete81.3695 %Subject ←→ Query25.8217
NC_012985:123500*Candidatus Liberibacter asiaticus str. psy62, complete genome80.4871 %Subject ←→ Query25.8249
NC_005956:699206*Bartonella henselae str. Houston-1, complete genome76.5778 %Subject ←→ Query25.8289
NC_013009:353690*Neorickettsia risticii str. Illinois, complete genome79.0104 %Subject ←→ Query25.836
NC_010287:899945*Chlamydia trachomatis 434/Bu, complete genome96.0294 %Subject ←→ Query25.8633
NC_007798:758873Neorickettsia sennetsu str. Miyayama, complete genome76.8107 %Subject ←→ Query25.8861
NC_007798:112840*Neorickettsia sennetsu str. Miyayama, complete genome76.5533 %Subject ←→ Query26.3358
NC_002491:585807Chlamydophila pneumoniae J138, complete genome81.636 %Subject ←→ Query26.3619
NC_009009:219087*Streptococcus sanguinis SK36, complete genome75.4626 %Subject ←→ Query26.3771
NC_013009:270000*Neorickettsia risticii str. Illinois, complete genome78.2782 %Subject ←→ Query26.4713
NC_013009:689978*Neorickettsia risticii str. Illinois, complete genome79.5466 %Subject ←→ Query26.5139
NC_010280:899974*Chlamydia trachomatis L2b/UCH-1/proctitis, complete genome96.0018 %Subject ←→ Query26.6415
NC_015177:1476073Pedobacter saltans DSM 12145 chromosome, complete genome75.8425 %Subject ←→ Query27.0252
NC_007798:301456*Neorickettsia sennetsu str. Miyayama, complete genome77.1354 %Subject ←→ Query27.1158
NC_014774:605085*Candidatus Liberibacter solanacearum CLso-ZC1 chromosome, complete75.8946 %Subject ←→ Query27.2377
NC_006448:1604627*Streptococcus thermophilus LMG 18311, complete genome76.5962 %Subject ←→ Query27.266
NC_012985:410307*Candidatus Liberibacter asiaticus str. psy62, complete genome76.4461 %Subject ←→ Query27.474
NC_012846:1467446*Bartonella grahamii as4aup, complete genome76.3542 %Subject ←→ Query27.6969
NC_014774:995000*Candidatus Liberibacter solanacearum CLso-ZC1 chromosome, complete77.9933 %Subject ←→ Query27.721
NC_015177:2642368*Pedobacter saltans DSM 12145 chromosome, complete genome75.6158 %Subject ←→ Query27.7772
NC_000917:270500Archaeoglobus fulgidus DSM 4304, complete genome75.1134 %Subject ←→ Query27.8089
NC_006448:351998*Streptococcus thermophilus LMG 18311, complete genome75.6281 %Subject ←→ Query28.1286
NC_008783:222000*Bartonella bacilliformis KC583, complete genome76.1091 %Subject ←→ Query28.2988
NC_005956:1455496*Bartonella henselae str. Houston-1, complete genome76.4767 %Subject ←→ Query28.4523
NC_013741:1196997*Archaeoglobus profundus DSM 5631, complete genome75.8333 %Subject ←→ Query28.4776
NC_000117:845141*Chlamydia trachomatis D/UW-3/CX, complete genome84.038 %Subject ←→ Query28.6552
NC_013721:533048Gardnerella vaginalis 409-05, complete genome76.5135 %Subject ←→ Query28.7101
NC_006449:1606948*Streptococcus thermophilus CNRZ1066, complete genome76.5135 %Subject ←→ Query28.7251
NC_013721:820852Gardnerella vaginalis 409-05, complete genome75.3033 %Subject ←→ Query28.7271
NC_006448:59654*Streptococcus thermophilus LMG 18311, complete genome76.3205 %Subject ←→ Query28.8815
NC_012985:846202*Candidatus Liberibacter asiaticus str. psy62, complete genome78.6765 %Subject ←→ Query28.926
NC_014011:813645*Aminobacterium colombiense DSM 12261 chromosome, complete genome76.204 %Subject ←→ Query28.9309
NC_005955:173436*Bartonella quintana str. Toulouse, complete genome77.4908 %Subject ←→ Query28.9987
NC_010161:1914000*Bartonella tribocorum CIP 105476, complete genome77.6593 %Subject ←→ Query29.0734
NC_006449:5046*Streptococcus thermophilus CNRZ1066, complete genome75.4351 %Subject ←→ Query29.2372
NC_014932:1232346*Bartonella clarridgeiae 73, complete genome77.7665 %Subject ←→ Query29.2886
NC_006449:58436*Streptococcus thermophilus CNRZ1066, complete genome76.5135 %Subject ←→ Query29.5887
NC_012985:779279*Candidatus Liberibacter asiaticus str. psy62, complete genome77.8891 %Subject ←→ Query29.7027
NC_014774:293800*Candidatus Liberibacter solanacearum CLso-ZC1 chromosome, complete75.2665 %Subject ←→ Query29.7348
NC_014011:1139818Aminobacterium colombiense DSM 12261 chromosome, complete genome77.5643 %Subject ←→ Query29.7902
NC_006448:5046*Streptococcus thermophilus LMG 18311, complete genome75.5055 %Subject ←→ Query29.871
NC_013456:212150Vibrio sp. Ex25 chromosome 1, complete genome75.5392 %Subject ←→ Query29.9962
NC_012982:1899973Hirschia baltica ATCC 49814, complete genome78.1342 %Subject ←→ Query30.3976
NC_015760:2009425*Streptococcus salivarius CCHSS3, complete genome76.4277 %Subject ←→ Query30.5074
NC_012881:1802000*Desulfovibrio salexigens DSM 2638, complete genome75.8548 %Subject ←→ Query30.7507
NC_012846:1741000*Bartonella grahamii as4aup, complete genome75.9835 %Subject ←→ Query30.8062
NC_015276:632206Marinomonas mediterranea MMB-1 chromosome, complete genome77.5582 %Subject ←→ Query30.8175
NC_012846:1888000*Bartonella grahamii as4aup, complete genome75.1654 %Subject ←→ Query30.8764
NC_010161:205500Bartonella tribocorum CIP 105476, complete genome76.3909 %Subject ←→ Query31.0171
NC_015177:258504*Pedobacter saltans DSM 12145 chromosome, complete genome76.3205 %Subject ←→ Query31.168
NC_013741:1144592*Archaeoglobus profundus DSM 5631, complete genome75.098 %Subject ←→ Query31.7999
NC_014011:527681Aminobacterium colombiense DSM 12261 chromosome, complete genome75.8548 %Subject ←→ Query32.0738
NC_009654:3316458*Marinomonas sp. MWYL1, complete genome75.4841 %Subject ←→ Query32.1528
NC_013203:472679*Atopobium parvulum DSM 20469, complete genome75.4197 %Subject ←→ Query33.4886
NC_008783:1101973*Bartonella bacilliformis KC583, complete genome76.8873 %Subject ←→ Query33.6628
NC_005955:1166521*Bartonella quintana str. Toulouse, complete genome76.5104 %Subject ←→ Query34.2164
NC_015318:249445*Hippea maritima DSM 10411 chromosome, complete genome76.2224 %Subject ←→ Query36.5397