Pre_GI: OUP Neighbours

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Query: NC_012917:4646491 Pectobacterium carotovorum subsp. carotovorum PC1, complete genome

D: 32.6958

Host Lineage: Pectobacterium carotovorum; Pectobacterium; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: Temp: Mesophile; Habitat: Host. Pectobacterium carotovorum causes soft-rot diseases of various plant hosts through degradation of the plant cell walls. Formerly Erwinia, these organisms are plant-specific pathogens that invade the vascular systems of plants. Pectobacterium colonize the intercellular spaces of plant cells and deliver potent effector molecules (Avr - avirulence) through a type III secretion system (Hrp - hypersensitive response and pathogenicity). Avr proteins control host-bacterium interactions, including host range. Expression of the plant cell-wall-degrading enzymes is controlled through a quorum-sensing mechanism that quantifies the number of Pectobacterium bacteria through measurement of the concentration of small molecules (acyl homoserine lactones) produced by Pectobacterium.

Number of Neighbours: 99




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Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

Subject IslandSubject Host Description Compositional Similarity Proposed Island FlowSubject Island D
NC_010468:1343228Escherichia coli ATCC 8739, complete genome79.8438 %Subject ←→ Query29.0512
NC_012912:4737703Dickeya zeae Ech1591, complete genome80.6863 %Subject ←→ Query29.5142
NC_012880:2480000Dickeya dadantii Ech703, complete genome76.3051 %Subject ←→ Query30.1678
NC_015968:204969*Enterobacter asburiae LF7a chromosome, complete genome82.2243 %Subject ←→ Query30.2205
NC_012880:913698Dickeya dadantii Ech703, complete genome78.1403 %Subject ←→ Query30.49
NC_015968:4389871Enterobacter asburiae LF7a chromosome, complete genome79.0441 %Subject ←→ Query30.7332
NC_004631:2755306Salmonella enterica subsp. enterica serovar Typhi Ty2, complete75.2574 %Subject ←→ Query30.7575
NC_013282:646569Cronobacter turicensis, complete genome79.5895 %Subject ←→ Query30.8062
NC_012880:1127997*Dickeya dadantii Ech703, complete genome77.6746 %Subject ←→ Query30.9614
NC_003198:2769449Salmonella enterica subsp. enterica serovar Typhi str. CT18,75.2574 %Subject ←→ Query31.0494
NC_012912:2800884*Dickeya zeae Ech1591, complete genome77.7574 %Subject ←→ Query31.095
NC_012917:3378759Pectobacterium carotovorum subsp. carotovorum PC1, complete genome80.9988 %Subject ←→ Query31.1132
NC_015663:1902344*Enterobacter aerogenes KCTC 2190 chromosome, complete genome75.5882 %Subject ←→ Query31.1284
NC_006511:3759550Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC80.818 %Subject ←→ Query31.1345
NC_012917:4328463Pectobacterium carotovorum subsp. carotovorum PC1, complete genome82.3131 %Subject ←→ Query31.405
NC_012912:1295653Dickeya zeae Ech1591, complete genome79.8407 %Subject ←→ Query31.554
NC_011149:3895921Salmonella enterica subsp. enterica serovar Agona str. SL483,80.962 %Subject ←→ Query31.5601
NC_015663:4447984Enterobacter aerogenes KCTC 2190 chromosome, complete genome78.223 %Subject ←→ Query31.6444
NC_013282:3719500*Cronobacter turicensis, complete genome76.4828 %Subject ←→ Query31.6817
NC_010102:2881714Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7,75.046 %Subject ←→ Query32.0373
NC_004631:3841975Salmonella enterica subsp. enterica serovar Typhi Ty2, complete80.5913 %Subject ←→ Query32.0647
NC_010102:3919999Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7,80.5821 %Subject ←→ Query32.0708
NC_003197:3971905Salmonella typhimurium LT2, complete genome80.6342 %Subject ←→ Query32.0829
NC_014500:3519722Dickeya dadantii 3937 chromosome, complete genome76.2377 %Subject ←→ Query32.164
NC_012912:1229333Dickeya zeae Ech1591, complete genome78.5754 %Subject ←→ Query32.2592
NC_012912:325913Dickeya zeae Ech1591, complete genome78.8511 %Subject ←→ Query32.3565
NC_011083:3985618Salmonella enterica subsp. enterica serovar Heidelberg str. SL476,80.7598 %Subject ←→ Query32.4599
NC_003198:3855157Salmonella enterica subsp. enterica serovar Typhi str. CT18,80.4902 %Subject ←→ Query32.5632
NC_013421:1954915*Pectobacterium wasabiae WPP163, complete genome75.3799 %Subject ←→ Query32.6483
NC_013592:3397304Dickeya dadantii Ech586, complete genome75.1409 %Subject ←→ Query32.6808
NC_014306:2476316Erwinia billingiae Eb661, complete genome75.6403 %Subject ←→ Query32.9311
NC_012880:3645304Dickeya dadantii Ech703, complete genome76.4767 %Subject ←→ Query33.3293
NC_013716:1756545*Citrobacter rodentium ICC168, complete genome77.7972 %Subject ←→ Query33.4286
NC_013421:3752619*Pectobacterium wasabiae WPP163, complete genome76.443 %Subject ←→ Query33.6393
NC_012779:3652737Edwardsiella ictaluri 93-146, complete genome75.0521 %Subject ←→ Query33.7001
NC_013282:116649*Cronobacter turicensis, complete genome76.1489 %Subject ←→ Query33.8673
NC_012912:777592*Dickeya zeae Ech1591, complete genome80.4105 %Subject ←→ Query33.9737
NC_012779:3570720*Edwardsiella ictaluri 93-146, complete genome75.2757 %Subject ←→ Query34.4297
NC_013592:3618248*Dickeya dadantii Ech586, complete genome75.5239 %Subject ←→ Query34.4581
NC_013508:3593000Edwardsiella tarda EIB202, complete genome75.8241 %Subject ←→ Query34.4706
NC_004547:843475*Erwinia carotovora subsp. atroseptica SCRI1043, complete genome77.9289 %Subject ←→ Query34.6881
NC_012779:3316877Edwardsiella ictaluri 93-146, complete genome75.7904 %Subject ←→ Query34.9445
NC_009792:808332Citrobacter koseri ATCC BAA-895, complete genome76.3511 %Subject ←→ Query35.0274
NC_010694:3055403Erwinia tasmaniensis, complete genome75.1685 %Subject ←→ Query35.0644
NC_009778:1902995Enterobacter sakazakii ATCC BAA-894, complete genome76.2898 %Subject ←→ Query35.1593
NC_003198:3824187Salmonella enterica subsp. enterica serovar Typhi str. CT18,78.4099 %Subject ←→ Query35.4207
NC_010694:614985Erwinia tasmaniensis, complete genome76.1826 %Subject ←→ Query35.5876
NC_010067:3753971Salmonella enterica subsp. arizonae serovar 62:z4,z23:--, complete79.4087 %Subject ←→ Query35.7065
NC_006905:3942753Salmonella enterica subsp. enterica serovar Choleraesuis str79.2463 %Subject ←→ Query35.749
NC_013421:1038500Pectobacterium wasabiae WPP163, complete genome76.4001 %Subject ←→ Query35.7825
NC_010067:632683Salmonella enterica subsp. arizonae serovar 62:z4,z23:--, complete78.3027 %Subject ←→ Query35.8098
NC_013421:1545386Pectobacterium wasabiae WPP163, complete genome79.0686 %Subject ←→ Query35.9253
NC_012779:2424967*Edwardsiella ictaluri 93-146, complete genome75.9038 %Subject ←→ Query35.992
NC_004631:685357*Salmonella enterica subsp. enterica serovar Typhi Ty2, complete77.0864 %Subject ←→ Query36.1113
NC_004631:3809678Salmonella enterica subsp. enterica serovar Typhi Ty2, complete78.5018 %Subject ←→ Query36.1376
NC_006511:682863*Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC80.3523 %Subject ←→ Query36.3874
NC_003197:4005857Salmonella typhimurium LT2, complete genome78.6428 %Subject ←→ Query36.3904
NC_013421:1143500Pectobacterium wasabiae WPP163, complete genome76.7402 %Subject ←→ Query36.4256
NC_011080:3976441Salmonella enterica subsp. enterica serovar Newport str. SL254,78.6734 %Subject ←→ Query36.5166
NC_012880:2778795Dickeya dadantii Ech703, complete genome81.7157 %Subject ←→ Query36.5333
NC_011149:361765Salmonella enterica subsp. enterica serovar Agona str. SL483,76.443 %Subject ←→ Query36.5643
NC_004547:138500Erwinia carotovora subsp. atroseptica SCRI1043, complete genome83.027 %Subject ←→ Query36.6454
NC_009778:3454790Enterobacter sakazakii ATCC BAA-894, complete genome76.3603 %Subject ←→ Query36.7583
NC_011080:383441Salmonella enterica subsp. enterica serovar Newport str. SL254,76.4737 %Subject ←→ Query37.0114
NC_008150:1420825*Yersinia pestis Antiqua, complete genome77.1232 %Subject ←→ Query37.0184
NC_005810:1794490*Yersinia pestis biovar Microtus str. 91001, complete genome77.258 %Subject ←→ Query37.035
NC_003198:2297837Salmonella enterica subsp. enterica serovar Typhi str. CT18,76.7157 %Subject ←→ Query37.159
NC_010102:3955479Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7,78.9399 %Subject ←→ Query37.2943
NC_003143:2137945*Yersinia pestis CO92, complete genome77.0312 %Subject ←→ Query37.3318
NC_006511:3794017Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC78.1097 %Subject ←→ Query37.3602
NC_011080:2342672Salmonella enterica subsp. enterica serovar Newport str. SL254,77.2304 %Subject ←→ Query37.4165
NC_010694:2189652*Erwinia tasmaniensis, complete genome75.9406 %Subject ←→ Query37.4179
NC_014500:2934232*Dickeya dadantii 3937 chromosome, complete genome78.3364 %Subject ←→ Query37.5286
NC_006905:2355290Salmonella enterica subsp. enterica serovar Choleraesuis str77.1385 %Subject ←→ Query37.6094
NC_012779:3016327Edwardsiella ictaluri 93-146, complete genome79.1115 %Subject ←→ Query37.6194
NC_011083:4020000Salmonella enterica subsp. enterica serovar Heidelberg str. SL476,78.9338 %Subject ←→ Query37.6885
NC_012912:647369Dickeya zeae Ech1591, complete genome76.4737 %Subject ←→ Query37.7391
NC_014500:894136Dickeya dadantii 3937 chromosome, complete genome79.9724 %Subject ←→ Query37.8586
NC_011149:2040396Salmonella enterica subsp. enterica serovar Agona str. SL483,78.9124 %Subject ←→ Query37.9381
NC_014500:1646854*Dickeya dadantii 3937 chromosome, complete genome80.6526 %Subject ←→ Query37.9513
NC_011149:2294500Salmonella enterica subsp. enterica serovar Agona str. SL483,77.549 %Subject ←→ Query38.0253
NC_011149:3930358Salmonella enterica subsp. enterica serovar Agona str. SL483,78.7163 %Subject ←→ Query38.0507
NC_007645:6991163Hahella chejuensis KCTC 2396, complete genome75.0643 %Subject ←→ Query38.1445
NC_003198:2703013*Salmonella enterica subsp. enterica serovar Typhi str. CT18,75.0061 %Subject ←→ Query38.1505
NC_013716:4824541*Citrobacter rodentium ICC168, complete genome76.0202 %Subject ←→ Query38.2235
NC_013282:1256769Cronobacter turicensis, complete genome77.9871 %Subject ←→ Query38.8742
NC_013508:275081*Edwardsiella tarda EIB202, complete genome75.9375 %Subject ←→ Query39.2554
NC_011080:3941909Salmonella enterica subsp. enterica serovar Newport str. SL254,79.8621 %Subject ←→ Query39.4334
NC_006905:2805877*Salmonella enterica subsp. enterica serovar Choleraesuis str76.5165 %Subject ←→ Query39.786
NC_015663:770485*Enterobacter aerogenes KCTC 2190 chromosome, complete genome76.9455 %Subject ←→ Query39.8332
NC_004547:667988*Erwinia carotovora subsp. atroseptica SCRI1043, complete genome77.019 %Subject ←→ Query39.9614
NC_013592:1424560Dickeya dadantii Ech586, complete genome75.0184 %Subject ←→ Query41.2418
NC_013282:3216226*Cronobacter turicensis, complete genome79.0533 %Subject ←→ Query41.2788
NC_013508:876431*Edwardsiella tarda EIB202, complete genome78.0913 %Subject ←→ Query41.7282
NC_013283:113660Cronobacter turicensis plasmid pCTU1, complete sequence75.9314 %Subject ←→ Query42.151
NC_009648:293052*Klebsiella pneumoniae subsp. pneumoniae MGH 78578, complete genome76.3787 %Subject ← Query43.5401
NC_014500:3175283Dickeya dadantii 3937 chromosome, complete genome75.8272 %Subject ← Query44.4588
NC_012779:2586175Edwardsiella ictaluri 93-146, complete genome77.8401 %Subject ← Query45.323
NC_009778:1141716Enterobacter sakazakii ATCC BAA-894, complete genome78.2659 %Subject ← Query48.5924