Pre_GI: OUP Neighbours

Some Help

Query: NC_005126:1265071 Photorhabdus luminescens subsp. laumondii TTO1, complete genome

D: 37.9976

Host Lineage: Photorhabdus luminescens; Photorhabdus; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This strain was isolated on Trinidad and Tobago. It is a symbiont of the nematode Heterorhabditis bacteriophora. Bioluminescent bacterium. This organism is unusual in that it is symbiotic within one insect, and pathogenic in another, the only organism that is known to exhibit this dual phenotype. Enzymes are then released by the bacteria that result in rapid degradation of the insect body, allowing both bacteria and nematode to feed and reproduce. During this period Photorhabdus luminescens releases bacteriocidal products, including antibiotics and bacteriocins, that prevent infection of the larva by competitive microbes. The result is promotion of Photorhabdus luminescens-nematode interactions that result in continuation of the symbiotic relationship. In order to engage in a symbiotic relationship with the nematode and a pathogenic one with the insect larva, the bacterium encodes specific factors that encourage both. These include a large number of genes that code for secreted toxins and enzymes, as well as genes that encode products for the production of antibiotics and bacteriocins. Secretion of these products occurs by an array of systems including type I, type II, and type III secretion systems. The type III system is closely related to the Yersinia plasmid-encoded type III system. Genes that promote symbiotic relationships are also encoded on genomic islands on the chromosome including some that affect nematode development. Virulence genes appear to be active during exponential growth. Symbiotic genes appear to function during stationary phase (post-exponential) growth. The switch from one state to another is controlled. Photorhabdus luminescens is capable of giving off light, a complex process that requires the products of the lux operon.

Number of Neighbours: 36




Search Results with any or all of these Fields

Host Accession, e.g. NC_0123..Host Description, e.g. Clostri...
Host Lineage, e.g. archae, Proteo, Firmi...
Host Information, e.g. soil, Thermo, Russia



Select all Donors or Recipients for Query Island



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

Subject IslandSubject Host Description Compositional Similarity Proposed Island FlowSubject Island D
NC_005810:4469156Yersinia pestis biovar Microtus str. 91001, complete genome75.7292 %Subject ←→ Query29.5112
NC_012880:1127997*Dickeya dadantii Ech703, complete genome76.2071 %Subject ←→ Query30.9614
NC_012912:2800884*Dickeya zeae Ech1591, complete genome77.6685 %Subject ←→ Query31.095
NC_003277:22257Salmonella typhimurium LT2 plasmid pSLT, complete sequence78.1618 %Subject ←→ Query31.1132
NC_006511:3759550Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC75.1103 %Subject ←→ Query31.1345
NC_008150:3529430Yersinia pestis Antiqua, complete genome75.4228 %Subject ←→ Query31.4433
NC_012962:3864000*Photorhabdus asymbiotica, complete genome82.5858 %Subject ←→ Query31.492
NC_010102:3919999Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7,75.1991 %Subject ←→ Query32.0708
NC_013592:3397304Dickeya dadantii Ech586, complete genome76.5411 %Subject ←→ Query32.6808
NC_014306:2476316Erwinia billingiae Eb661, complete genome76.5686 %Subject ←→ Query32.9311
NC_006155:1567306Yersinia pseudotuberculosis IP 32953, complete genome75.1532 %Subject ←→ Query33.2342
NC_012880:3645304Dickeya dadantii Ech703, complete genome76.1734 %Subject ←→ Query33.3293
NC_004088:3955933Yersinia pestis KIM, complete genome75.481 %Subject ←→ Query33.4603
NC_010159:1861465Yersinia pestis Angola, complete genome75.2175 %Subject ←→ Query33.8947
NC_012912:777592*Dickeya zeae Ech1591, complete genome76.6146 %Subject ←→ Query33.9737
NC_010159:1101241Yersinia pestis Angola, complete genome75.6556 %Subject ←→ Query33.9894
NC_014562:1883517*Pantoea vagans C9-1 chromosome, complete genome75.6648 %Subject ←→ Query34.2182
NC_010694:614985Erwinia tasmaniensis, complete genome77.5521 %Subject ←→ Query35.5876
NC_010067:632683Salmonella enterica subsp. arizonae serovar 62:z4,z23:--, complete76.6268 %Subject ←→ Query35.8098
NC_016048:3856665Oscillibacter valericigenes Sjm18-20, complete genome75.0643 %Subject ←→ Query35.825
NC_012779:2424967*Edwardsiella ictaluri 93-146, complete genome75.7292 %Subject ←→ Query35.992
NC_012880:2778795Dickeya dadantii Ech703, complete genome75.9038 %Subject ←→ Query36.5333
NC_012779:2064582Edwardsiella ictaluri 93-146, complete genome75.8272 %Subject ←→ Query37.0151
NC_014228:2270000Xenorhabdus nematophila ATCC 19061, complete genome75.8272 %Subject ←→ Query37.3838
NC_010694:2189652*Erwinia tasmaniensis, complete genome76.5135 %Subject ←→ Query37.4179
NC_014500:2934232*Dickeya dadantii 3937 chromosome, complete genome76.6422 %Subject ←→ Query37.5286
NC_012962:3568046Photorhabdus asymbiotica, complete genome81.3542 %Subject ←→ Query37.813
NC_014500:894136Dickeya dadantii 3937 chromosome, complete genome79.8039 %Subject ←→ Query37.8586
NC_011149:2040396Salmonella enterica subsp. enterica serovar Agona str. SL483,76.4706 %Subject ←→ Query37.9381
NC_014500:1646854*Dickeya dadantii 3937 chromosome, complete genome77.0466 %Subject ←→ Query37.9513
NC_014228:2883500Xenorhabdus nematophila ATCC 19061, complete genome79.6078 %Subject ←→ Query39.0811
NC_014228:3022903Xenorhabdus nematophila ATCC 19061, complete genome77.5919 %Subject ←→ Query39.1304
NC_012962:1661683Photorhabdus asymbiotica, complete genome81.0815 %Subject ←→ Query40.4188
NC_014228:3282500Xenorhabdus nematophila ATCC 19061, complete genome80.576 %Subject ←→ Query41.4806
NC_012779:1449500*Edwardsiella ictaluri 93-146, complete genome77.6838 %Subject ←→ Query41.6091
NC_010660:175200*Shigella boydii CDC 3083-94 plasmid pBS512_211, complete sequence75.8915 %Subject ←→ Query46.3542