Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




UCMB5137: Bacillus atrophaeus UCMB-5137

NCBI: UCMB5137

Host Lineage: Bacillus atrophaeus; Bacillus; Bacillaceae; Bacillales; Firmicutes; Bacteria

General Information: Rhizosphere; Ukraine. Bacillus atrophaeus UCMB-5137 shows an extraordinary activity in root colonization and plant and crop protection. Isolated from grass rhizosphere in Ukraine in 1976. Ability to colonize plant roots and to inhibit the growth of fungal and bacterial phytopathogens on inoculated seedlings and harvested fruits.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
11*3837038370Island text2.3119630.625416.045Neighbours21BLASTN+1.gbk
212065613949318838Island text1.8089827.231346.8997Neighbours363BLASTN+120656.gbk
314076617053729772Island text1.7136627.792637.7299Neighbours21BLASTN+140766.gbk
417459320764933057Island text3.0292430.389919.471Neighbours21BLASTN+174593.gbk
5276121*29641620296Island text1.7443427.258616.3804Neighbours23BLASTN+276121.gbk
630364132689823258Island text1.4970431.675639.3653Neighbours31BLASTN+303641.gbk
7409500*43617726678Island text3.2599731.278217.6676Neighbours21BLASTN+409500.gbk
8808967*82798019014Island text1.6027427.609819.7825Neighbours21BLASTN808967.gbk
986173488366121928Island text1.656627.637448.9722Neighbours31BLASTN+861734.gbk
101159520*117958420065Island text1.5487127.4638.7108Neighbours37BLASTN1159520.gbk
111375622*139480219181Island text1.5723129.744243.6127BLASTN1375622.gbk
121396603*142188425282Island text1.8649628.930621.041Neighbours21BLASTN+1396603.gbk
131522159154154719389Island text1.8189427.010429.9945Neighbours21BLASTN+1522159.gbk
141594000161666622667Island text1.5873126.732714.6729Neighbours21BLASTN+1594000.gbk
151676568169524918682Island text1.6618127.873717.2555Neighbours21BLASTN1676568.gbk
161834999185304118043Island text1.5047127.103617.4625Neighbours24BLASTN1834999.gbk
172054735211209957365Island text2.2707229.733321.2454Neighbours21BLASTN+2054735.gbk
182128500*215835729858Island text2.5212430.23213.2576Neighbours21BLASTN+2128500.gbk
192418403*244368125279Island text1.8820830.67416.33Neighbours21BLASTN2418403.gbk
202894511291649621986Island text1.7715326.954617.6514Neighbours21BLASTN+2894511.gbk
213601629*362909927471Island text3.0020531.391114.2499Neighbours21BLASTN+3601629.gbk
223660165369021230048Island text2.5961529.658117.4595Neighbours21BLASTN+3660165.gbk
233857960389056232603Island text1.5608227.586631.4404Neighbours21BLASTN+3857960.gbk