Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NS_000195: Candidatus Cloacamonas acidaminovorans

NCBI: NS_000195

Host Lineage: Cloacimonas acidaminovorans; Cloacimonas; ; ; unclassified Bacteria; Bacteria

General Information: Syntrophic bacterium that is present in many anaerobic digesters. The sludge sample was obtained from an anaerobic mesophilic digester (7,000 m3) at the Evry wastewater treatment plant (250,000 population equivalents), located about 35 km south of Paris, France.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
1219785*28241462630Island text2.105237.860731.4559Neighbours21BLASTN219785.gbk
2526983*56447137489Island text2.2518637.266936.1165Neighbours321BLASTN526983.gbk
31257834*128077822945Island text2.3834831.383147.5122Neighbours21BLASTN1257834.gbk
41785910*181597330064Island text2.1447330.816344.0957Neighbours21BLASTN1785910.gbk