Pre_GI Island

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n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS

NC_021508: Treponema pallidum subsp. pallidum SS14, complete genome

NCBI: NC_021508

Host Lineage: Treponema pallidum; Treponema; Spirochaetaceae; Spirochaetales; Spirochaetes; Bacteria

General Information: This organisms is divided into subspecies each of which causes a specific disease. pallidum causes the venereal disease syphilis. pertenue, carateum and endemicum cause the skin infections yaws, pinta and bejel, respectively. Cells are motile, slender, helically shaped flexible organisms, 0.1-0.18 microns in diameter and 6-20 microns long.

Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
112543*3293120389Island text1.7714336.995454.7131Neighbours10BLASTN+12543.gbk
2107384*13088823505Island text1.4165734.265639.1704Neighbours10BLASTN+107384.gbk
354659257625329662Island text1.8546535.06255.4117Neighbours10BLASTN+546592.gbk
4745388*76830722920Island text1.8347941.576723.3256Neighbours10BLASTN+745388.gbk
5775264*79534920086Island text1.8738136.563749.1442Neighbours10BLASTN+775264.gbk
6949769*97177922011Island text1.7115234.845246.6734Neighbours10BLASTN+949769.gbk