Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_021184: Desulfotomaculum gibsoniae DSM 7213, complete genome

NCBI: NC_021184

Host Lineage: Desulfotomaculum gibsoniae; Desulfotomaculum; Peptococcaceae; Clostridiales; Firmicutes; Bacteria

General Information: Country: Germany; Environment: Animal intestinal microflora, Fresh water; Isolation: freshwater mud; Temp: Mesophile; Temp: 37C. This organism is a sulfate-reducing spore forming Gram-positive bacterium which grows anaerobically with sulfate and sulfite as electron acceptors.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
11*1638816388Island text2.1191231.748331.5213Neighbours337BLASTN1.gbk
214800017152023521Island text1.6968628.067217.6635Neighbours22BLASTN148000.gbk
320749223069323202Island text1.9120231.465125.9202Neighbours22BLASTN207492.gbk
450472852812423397Island text1.7812230.113115.9155Neighbours32BLASTN504728.gbk
554994056878118842Island text1.7964831.108126.3309Neighbours21BLASTN+549940.gbk
656965359100021348Island text1.7181730.672432.574Neighbours22BLASTN569653.gbk
759250161077518275Island text1.5536331.003838.5857Neighbours22BLASTN592501.gbk
865709368009923007Island text1.679429.070432.7872Neighbours22BLASTN657093.gbk
982300084269319694Island text1.6282531.987732.2756Neighbours22BLASTN+823000.gbk
101024305*104211117807Island text2.1466230.836623.59Neighbours21BLASTN1024305.gbk
111125000114512720128Island text1.7388830.556944.4421Neighbours22BLASTN1125000.gbk
121257722*128104023319Island text1.7874534.477454.6806Neighbours22BLASTN+1257722.gbk
131484352*152109936748Island text1.9228331.198129.3737Neighbours21BLASTN+1484352.gbk
141729867*176987940013Island text3.2665235.466939.8088Neighbours22BLASTN1729867.gbk
152013058203596122904Island text1.813834.504250.074Neighbours22BLASTN2013058.gbk
162238500*226036721868Island text1.6648930.067542.0713Neighbours21BLASTN+2238500.gbk
172936244297222835985Island text2.6930632.933525.6101Neighbours22BLASTN+2936244.gbk
182975975299467818704Island text1.5888631.005432.2825Neighbours316BLASTN2975975.gbk
193149000*316797118972Island text1.4984535.74933.2257Neighbours22BLASTN+3149000.gbk
203174500*320109926600Island text2.1071430.690719.972Neighbours21BLASTN3174500.gbk
213259908327862618719Island text1.8968630.930827.1795Neighbours21BLASTN+3259908.gbk
223497000352303526036Island text2.1641631.110221.5008Neighbours21BLASTN+3497000.gbk
233533500356421530716Island text2.4828931.664423.393Neighbours23BLASTN+3533500.gbk
243571014*359753326520Island text2.1495933.11724.5236Neighbours23BLASTN+3571014.gbk
253793285383467841394Island text1.5476143.482539.6097Neighbours316BLASTN3793285.gbk
263841172387450633335Island text1.6183732.085530.8054BLASTN3841172.gbk
273912805393359920795Island text2.2465539.634641.4745Neighbours22BLASTN3912805.gbk
283940910396219921290Island text1.6542732.647327.9554Neighbours22BLASTN+3940910.gbk
293961552*399417632625Island text1.6060831.890135.3464Neighbours21BLASTN+3961552.gbk
304095276*411835423079Island text2.0865229.969225.7376Neighbours21BLASTN+4095276.gbk
314129419*415159922181Island text2.078831.277714.9739BLASTN4129419.gbk
324312000*433050718508Island text1.8498535.609449.4394Neighbours21BLASTN4312000.gbk
334456904*447585718954Island text2.2328530.882223.8397BLASTN4456904.gbk
344493440451912925690Island text1.8759131.67129.2281Neighbours337BLASTN+4493440.gbk
354524500*454458520086Island text1.7757830.675552.8993Neighbours337BLASTN+4524500.gbk