Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_021177: Streptomyces fulvissimus DSM 40593, complete genome

NCBI: NC_021177

Host Lineage: Streptomyces fulvissimus; Streptomyces; Streptomycetaceae; Actinomycetales; Actinobacteria; Bacteria

General Information: Produces the antibiotic Valinomycin that increases the transport of potassium across cell membranes.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
111871013659917890Island text1.7715412.375414.5816Neighbours11BLASTN+118710.gbk
216300018152218523Island text1.5265513.74949.35254Neighbours11BLASTN+163000.gbk
31418213144186323651Island text4.7714621.331827.0883Neighbours11BLASTN+1418213.gbk
41736854177659939746Island text1.970513.466721.4582Neighbours11BLASTN+1736854.gbk
51922930194704124112Island text3.5115720.026427.8032Neighbours11BLASTN1922930.gbk
62034722205851023789Island text1.8456417.507733.5269Neighbours11BLASTN+2034722.gbk
72139838216484225005Island text1.4874118.616220.8125Neighbours11BLASTN+2139838.gbk
82185898220648120584Island text3.0861814.922113.9192Neighbours11BLASTN2185898.gbk
92241647*226649824852Island text1.8258314.146521.5008Neighbours11BLASTN+2241647.gbk
102309615233757227958Island text1.533914.052417.292Neighbours11BLASTN+2309615.gbk
112451000*247327922280Island text1.5732515.564223.6082Neighbours11BLASTN+2451000.gbk
122766910278672119812Island text2.1477415.634912.6824Neighbours11BLASTN2766910.gbk
133598700*361863819939Island text1.6718614.837118.8726Neighbours11BLASTN+3598700.gbk
143627947*364778419838Island text2.0396612.341911.3656Neighbours11BLASTN+3627947.gbk
153867439388623218794Island text4.245218.790329.1711Neighbours11BLASTN+3867439.gbk
163997727*401925421528Island text4.0669718.764126.6386Neighbours11BLASTN+3997727.gbk
174041915*406445922545Island text1.7403712.793515.7575Neighbours11BLASTN4041915.gbk
184124839*415343928601Island text1.7231412.861718.6442Neighbours11BLASTN+4124839.gbk
194221309*424940828100Island text1.6626812.690515.8424Neighbours11BLASTN+4221309.gbk
204258102*427958121480Island text1.7508412.676214.009Neighbours11BLASTN4258102.gbk
214912982*493562522644Island text1.4892313.746413.4365Neighbours11BLASTN4912982.gbk
224945878*496359917722Island text3.7579716.109519.7458Neighbours11BLASTN4945878.gbk
235419620544465625037Island text5.0848323.499517.7123Neighbours11BLASTN+5419620.gbk
245697210*572187724668Island text2.1645112.718920.8795Neighbours11BLASTN+5697210.gbk
256127431*615220524775Island text2.5169612.892121.5922Neighbours11BLASTN6127431.gbk
266662668668358820921Island text1.5444917.07223.9592Neighbours11BLASTN+6662668.gbk
276954675697309918425Island text1.4835913.898317.962Neighbours11BLASTN6954675.gbk
287159654718278823135Island text1.5750517.358223.0085Neighbours8BLASTN+7159654.gbk
297462000748896926970Island text1.59313.831522.2804Neighbours11BLASTN+7462000.gbk
307815791783813922349Island text1.8381114.789924.6685Neighbours11BLASTN+7815791.gbk
317870464790349933036Island text1.5966113.2623.2793Neighbours11BLASTN+7870464.gbk