Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_021175: Streptococcus oligofermentans AS 1.3089, complete genome

NCBI: NC_021175

Host Lineage: Streptococcus oligofermentans; Streptococcus; Streptococcaceae; Lactobacillales; Firmicutes; Bacteria

General Information: An oral commensal, inhibits the growth of the dental caries pathogen Streptococcus mutans by producing large amounts of hydrogen peroxide. Therefore, it can be a potential probiotic for oral health.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
1155152*17951724366Island text2.478632.089554.3415Neighbours21BLASTN155152.gbk
2353292*37126317972Island text1.9072433.856746.5271Neighbours21BLASTN+353292.gbk
359796862009922132Island text2.334725.963630.8868Neighbours21BLASTN+597968.gbk
4687839*70988522047Island text2.5788534.176654.9362Neighbours21BLASTN+687839.gbk
5751616*77504523430Island text2.0251225.680923.3951Neighbours16BLASTN+751616.gbk
6789958*80920019243Island text2.3495826.367936.0641Neighbours21BLASTN+789958.gbk
784537086414718778Island text3.2744528.713421.2572Neighbours16BLASTN+845370.gbk
888184591805736213Island text1.4991533.846150.6517Neighbours21BLASTN+881845.gbk
996422498616221939Island text1.7339426.717535.8874Neighbours21BLASTN+964224.gbk
10997618102091723300Island text1.9642125.319234.3099Neighbours21BLASTN997618.gbk
111291707131439822692Island text2.3639428.20822.245Neighbours21BLASTN+1291707.gbk
121597613162110823496Island text2.4753227.768129.8115Neighbours21BLASTN+1597613.gbk
131635796*165947323678Island text1.8563126.319324.4427Neighbours16BLASTN+1635796.gbk
141973880199624222363Island text2.0923434.916158.1283Neighbours21BLASTN+1973880.gbk
152037219*205709919881Island text2.1935926.425711.664Neighbours21BLASTN+2037219.gbk
162063611*208863625026Island text2.0509828.630119.4537Neighbours25BLASTN+2063611.gbk