Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_021171: Bacillus sp. 1NLA3E, complete genome

NCBI: NC_021171

Host Lineage: Bacillus; Bacillus; Bacillaceae; Bacillales; Firmicutes; Bacteria

General Information: Denitrifying bacterial isolate from the uranium and nitrate contaminated subsurface at the U.S. DOE Oak Ridge Integrated Field Research Center.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
125400027628222283Island text3.3024530.177947.3687Neighbours21BLASTN+254000.gbk
2358456*37609917644Island text2.7868831.30850.7271Neighbours21BLASTN358456.gbk
341577143659620826Island text2.4887628.948646.6926Neighbours42BLASTN415771.gbk
460831563260124287Island text2.1768928.846640.4265Neighbours21BLASTN+608315.gbk
51354000*137919225193Island text2.7962931.360744.0194Neighbours21BLASTN1354000.gbk
61661923168490422982Island text1.5862421.388631.2827Neighbours21BLASTN1661923.gbk
71689518171107221555Island text2.2887128.175537.1442Neighbours21BLASTN1689518.gbk
82019755*204257822824Island text1.534422.309733.9505Neighbours21+2019755.gbk
92562000258736825369Island text1.4996624.31635.9209Neighbours21BLASTN+2562000.gbk
102697398*271566018263Island text1.4681724.738630.3387Neighbours21BLASTN2697398.gbk
114277484429909921616Island text2.4091631.090948.5233Neighbours21BLASTN4277484.gbk
124367834*439037922546Island text1.3874222.932930.1194Neighbours21BLASTN4367834.gbk
134425050444858523536Island text1.6131319.506932.8055Neighbours21BLASTN+4425050.gbk
144519495453887119377Island text1.5598424.246136.0986Neighbours21BLASTN4519495.gbk
154549673456886319191Island text1.485329.152540.0475BLASTN+4549673.gbk
164588792*464231253521Island text2.5498929.752949.4244Neighbours21BLASTN+4588792.gbk
174674086*469556921484Island text2.4450627.13742.6101Neighbours21BLASTN+4674086.gbk