Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_021066: Raoultella ornithinolytica B6, complete genome

NCBI: NC_021066

Host Lineage: Raoultella ornithinolytica; Raoultella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: Gram-negative aerobic bacillus belonging to the family Enterobacteriaceae. This 2,3-butanediol-producing bacterium was isolated from oil-contaminated soil on Backwoon Mountain in South Korea.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
146029251915858867Island text4.9396848.197326.804Neighbours41BLASTN+460292.gbk
2601029*62413023102Island text1.4815431.918827.6221Neighbours41BLASTN+601029.gbk
3839734*87672436991Island text3.9842146.136825.2299Neighbours41BLASTN+839734.gbk
41393750*141908425335Island text1.7750432.025423.525Neighbours41BLASTN+1393750.gbk
51712905*175859645692Island text1.8858331.142625.7993Neighbours51BLASTN+1712905.gbk
61778000179688518886Island text1.5240328.131132.3669Neighbours51BLASTN+1778000.gbk
72197490222049723008Island text1.6828132.766627.4035Neighbours51BLASTN+2197490.gbk
82226826*225422627401Island text2.0628337.126133.8913Neighbours41BLASTN+2226826.gbk
93028421*305110422684Island text1.6328529.762534.9122Neighbours41BLASTN3028421.gbk
103201500323157930080Island text1.7859135.708553.7398Neighbours41BLASTN+3201500.gbk
113703725*372609922375Island text4.3299250.56323.022Neighbours41BLASTN+3703725.gbk
123769405379116821764Island text1.9398935.309335.0461Neighbours51BLASTN3769405.gbk
134177217*419564918433Island text1.5245229.182933.3232Neighbours41BLASTN+4177217.gbk
144906239*493059624358Island text1.7672433.974531.4936Neighbours51BLASTN+4906239.gbk
155342127536560823482Island text1.4757233.0844.9933Neighbours51BLASTN+5342127.gbk