Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_021064: Propionibacterium avidum 44067, complete genome

NCBI: NC_021064

Host Lineage: Propionibacterium avidum; Propionibacterium; Propionibacteriaceae; Actinomycetales; Actinobacteria; Bacteria

General Information: Isolated from a carbuncle of the human trunk. An anaerobic Gram-positive bacterium that forms part of the normal human cutaneous microbiota, colonizing moist areas such as the vestibule of the nose, axilla, and perineum.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
1318165424922434Island text1.5069723.692942.2768Neighbours11BLASTN+31816.gbk
230363532843724803Island text1.6402220.023728.8038Neighbours11BLASTN+303635.gbk
379309881390220805Island text2.4145126.749342.2739Neighbours11BLASTN+793098.gbk
4816000*83991323914Island text1.7104719.426922.0886Neighbours11BLASTN+816000.gbk
51211480*123950528026Island text1.5805422.677125.5568Neighbours11BLASTN+1211480.gbk
61705961172851422554Island text2.7778226.945943.9623Neighbours11BLASTN+1705961.gbk
71789980*181232622347Island text2.9060225.381230.829Neighbours11BLASTN+1789980.gbk
82001786202537723592Island text1.5044222.744434.5231Neighbours11BLASTN+2001786.gbk
92085231211080625576Island text2.7626226.194743.8218Neighbours11BLASTN+2085231.gbk