Pre_GI Island

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n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS

NC_020995: Enterococcus casseliflavus EC20, complete genome

NCBI: NC_020995

Host Lineage: Enterococcus casseliflavus; Enterococcus; Enterococcaceae; Lactobacillales; Firmicutes; Bacteria

General Information: This genera consists of organisms typically found in the intestines of mammals, although through fecal contamination they can appear in sewage, soil, and water. They cause a number of infections that are becoming increasingly a problem due to the number of antibiotic resistance mechanisms these organisms have picked up. Both Enterococcus faecalis and Enterococcus faecium cause similar diseases in humans, and are mainly distinguished by their metabolic capabilities. This opportunistic pathogen can cause urinary tract infections, bacteremia (bacteria in the blood), and infective endocarditis (inflammation of the membrane surrounding the heart), similar to infections caused by Enterococcus faecium and faecalis. Hospital-acquired infections from this organism are on the rise due to the emergence of antiobiotic resistance strains.

Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
1245671*26941823748Island text1.4727426.854341.022BLASTN+245671.gbk
247776552321245448Island text3.0018928.44119.3034Neighbours21BLASTN477765.gbk
375131177460523295Island text1.8324332.392251.9468Neighbours21BLASTN751311.gbk
478966581409924435Island text2.2590924.866915.957Neighbours21BLASTN789665.gbk
51205524124570640183Island text1.4727631.104147.1738Neighbours325BLASTN1205524.gbk
62255521*227522819708Island text3.0102326.18425.7015Neighbours21BLASTN2255521.gbk
72636519*265800821490Island text1.7849727.918244.5774Neighbours21BLASTN+2636519.gbk
83252500327359921100Island text2.7391325.344520.3709Neighbours21BLASTN3252500.gbk
93300751*333214731397Island text1.9045535.644146.0704Neighbours21BLASTN3300751.gbk