Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_020911: Octadecabacter antarcticus 307, complete genome

NCBI: NC_020911

Host Lineage: Octadecabacter antarcticus; Octadecabacter; Rhodobacteraceae; Rhodobacterales; Proteobacteria; Bacteria

General Information: A psychrophilic marine microorganism. This strain was collected from McMurdo Sound, Antarctica.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
118500*3778319284Island text1.6294635.48348.9234BLASTN+18500.gbk
28371710740023684Island text1.5390233.035717.164Neighbours41BLASTN+83717.gbk
3349610*37259922990Island text1.7594735.225453.2888BLASTN+349610.gbk
41353896137287418979Island text1.5328730.03427.0679BLASTN+1353896.gbk
51549065157729328229Island text2.4578145.795231.3309BLASTN+1549065.gbk
61776670180309926430Island text1.8640635.72325.8602BLASTN+1776670.gbk
71859210188209922890Island text1.438533.791325.8984BLASTN+1859210.gbk
82793234281694623713Island text1.4843629.274141.8078Neighbours59BLASTN2793234.gbk
92921925*299019968275Island text1.6591932.544331.7013Neighbours44BLASTN+2921925.gbk
102998000*304209944100Island text1.7666933.067134.3635BLASTN+2998000.gbk
113046916306823221317Island text1.74936.05332.8253BLASTN+3046916.gbk
123076791310197525185Island text1.6907731.260928.6101Neighbours46BLASTN+3076791.gbk
133159290318348724198Island text1.5342628.252733.2014Neighbours41BLASTN+3159290.gbk
143410857*343382922973Island text1.5849132.816630.5397BLASTN+3410857.gbk
153475096350159926504Island text1.8111834.071422.7173BLASTN+3475096.gbk
164428000*445142123422Island text1.609226.878615.0506Neighbours11BLASTN4428000.gbk
174465500*448966524166Island text1.6747635.474134.5744BLASTN+4465500.gbk