Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_020908: Octadecabacter arcticus 238, complete genome

NCBI: NC_020908

Host Lineage: Octadecabacter arcticus; Octadecabacter; Rhodobacteraceae; Rhodobacterales; Proteobacteria; Bacteria

General Information: This strain was collected 350 km offshore Deadhorse, Alaska.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
1301563*32432722765Island text2.0158937.865254.3473BLASTN+301563.gbk
282358984214718559Island text1.5431828.018627.8383BLASTN+823589.gbk
31472981149914226162Island text2.0084540.691934.975BLASTN+1472981.gbk
41889759*191260822850Island text1.5690336.572246.1701BLASTN+1889759.gbk
51920169194317323005Island text1.6085529.588936.3023Neighbours11BLASTN+1920169.gbk
62466446248543318988Island text1.505929.827329.4555BLASTN+2466446.gbk
72571943259507523133Island text1.7050933.695332.3383BLASTN+2571943.gbk
82788852281909930248Island text2.3932240.806725.9698BLASTN+2788852.gbk
94093560411642622867Island text1.5284131.079821.714BLASTN+4093560.gbk
104263552*428430020749Island text1.7568534.399347.9931BLASTN+4263552.gbk
114550414457459924186Island text1.6442533.724535.9956Neighbours11BLASTN+4550414.gbk
125047410506517417765Island text1.5025630.587331.3315BLASTN+5047410.gbk