Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_020829: Pseudomonas denitrificans ATCC 13867, complete genome

NCBI: NC_020829

Host Lineage: Pseudomonas denitrificans; Pseudomonas; Pseudomonadaceae; Pseudomonadales; Proteobacteria; Bacteria

General Information: An industrial strain known for the production of vitamin B12. Denitrification.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
113959939599Island text1.9621624.342522.1213Neighbours11BLASTN+1.gbk
263677366480928037Island text3.0954228.713736.1976Neighbours11BLASTN+636773.gbk
380945782836118905Island text3.6553331.875926.1821Neighbours11BLASTN809457.gbk
4940692*99465253961Island text1.7117121.684543.2635Neighbours11BLASTN+940692.gbk
51068438*109497126534Island text2.7325326.615823.5911Neighbours11BLASTN+1068438.gbk
61307736133330225567Island text2.4258924.516238.8542Neighbours11BLASTN+1307736.gbk
71840281*187051030230Island text1.8546226.982540.0826Neighbours11BLASTN+1840281.gbk
82022000204585723858Island text3.0340931.21440.7874Neighbours11BLASTN2022000.gbk
92152000217446322464Island text1.8703321.844523.6928Neighbours11BLASTN+2152000.gbk
102754203278159927397Island text3.5292228.529334.5732Neighbours11BLASTN+2754203.gbk
113050817*306959918783Island text2.0577223.972525.8728Neighbours11BLASTN3050817.gbk
123434736346218227447Island text3.3698928.711435.0784Neighbours11BLASTN+3434736.gbk
134246847*426582018974Island text1.9639322.489122.9976Neighbours11BLASTN4246847.gbk
144390417441969529279Island text1.5872121.234621.449Neighbours11BLASTN+4390417.gbk
154429435445109921665Island text2.7038729.205330.4532Neighbours11BLASTN+4429435.gbk
165174354*522598151628Island text1.6115722.272225.0609Neighbours11BLASTN+5174354.gbk
175382500540313620637Island text4.1531237.576729.8674Neighbours11BLASTN+5382500.gbk
185620826564247821653Island text1.6033321.058825.4499Neighbours11BLASTN+5620826.gbk