Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_020541: Rhodanobacter sp. 2APBS1, complete genome

NCBI: NC_020541

Host Lineage: Rhodanobacter denitrificans; Rhodanobacter; Xanthomonadaceae; Xanthomonadales; Proteobacteria; Bacteria

General Information: Country: USA; Environment: Soil; Isolation: uranium and nitrate contaminated subsurface.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
1268406*29193323528Island text2.0449222.00425.7682Neighbours11BLASTN+268406.gbk
2468584*50265834075Island text3.2532225.537631.7634Neighbours11BLASTN468584.gbk
3625925*65461328689Island text2.3742724.643917.5769Neighbours11BLASTN+625925.gbk
41014176103259918424Island text2.8593225.545229.2024Neighbours11BLASTN1014176.gbk
51510782*153644625665Island text2.0323619.694413.2751Neighbours11BLASTN+1510782.gbk
61717140*173622419085Island text1.8988922.307220.3933Neighbours11BLASTN+1717140.gbk
71786500*182511138612Island text1.6990117.91125.7705Neighbours11BLASTN+1786500.gbk
81827689184924621558Island text2.9621729.980821.6149Neighbours11BLASTN+1827689.gbk
92191600220980318204Island text1.5251318.944617.2981Neighbours11BLASTN+2191600.gbk
102264521229278228262Island text1.9928518.148127.5978Neighbours11BLASTN+2264521.gbk
112487427*251385526429Island text2.1528321.668320.1828Neighbours11BLASTN+2487427.gbk
122551539*257719725659Island text2.1632222.100315.9413Neighbours11BLASTN+2551539.gbk
132694836271881923984Island text2.1399725.567235.0399Neighbours11BLASTN+2694836.gbk
142769419*280014030722Island text1.9000119.715718.8066Neighbours11BLASTN+2769419.gbk
152850831287244721617Island text3.1129226.864920.8727Neighbours11BLASTN2850831.gbk
163156500*321974563246Island text1.960821.932825.1546Neighbours11BLASTN3156500.gbk
173315068334204126974Island text2.6205625.911225.3803Neighbours11BLASTN3315068.gbk
183655223367940824186Island text2.0836321.565834.3001Neighbours11BLASTN+3655223.gbk
194122852*416192339072Island text2.0859423.497724.786Neighbours11BLASTN+4122852.gbk