Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_020453: Agromonas oligotrophica S58 DNA, complete genome

NCBI: NC_020453

Host Lineage: Bradyrhizobium oligotrophicum; Bradyrhizobium; Bradyrhizobiaceae; Rhizobiales; Proteobacteria; Bacteria

General Information: Nitrogen-fixing oligotrophic bacterium, which was isolated from paddy field soil. Anoxygenic photosynthesis, Carbon fixation, Denitrification, Nitrogen fixation, Thiosulfate oxidation, Endosymbiont.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
1896458*91917822721Island text1.6638321.530221.593Neighbours11BLASTN+896458.gbk
293639697628939894Island text1.6129222.025216.8864Neighbours11BLASTN+936396.gbk
31025891104809922209Island text1.4670819.880830.0889Neighbours11BLASTN+1025891.gbk
41072979112047147493Island text1.5964519.027120.7499Neighbours11BLASTN+1072979.gbk
51084238114489760660Island text1.9611223.269623.9235Neighbours11BLASTN1084238.gbk
61785473180825422782Island text1.8215224.12115.2028Neighbours11BLASTN+1785473.gbk
71881904191720635303Island text1.5185620.411419.6335Neighbours11BLASTN+1881904.gbk
83103549312489221344Island text1.5737825.246817.147Neighbours11BLASTN3103549.gbk
93179346*320391224567Island text2.3883524.795329.0657Neighbours11BLASTN+3179346.gbk
103950838399109940262Island text1.8824922.507320.3699Neighbours11BLASTN3950838.gbk
114696000*471843322434Island text1.5397919.607220.7882Neighbours11BLASTN+4696000.gbk
126821500685438832889Island text1.9118125.826423.045Neighbours11BLASTN+6821500.gbk
137409402*743330123900Island text2.3860225.961127.1176Neighbours11BLASTN7409402.gbk
147826358785809331736Island text2.2540925.976116.3385Neighbours11BLASTN+7826358.gbk