Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_020450: Lactococcus lactis subsp. lactis IO-1 DNA, complete genome

NCBI: NC_020450

Host Lineage: Lactococcus lactis; Lactococcus; Streptococcaceae; Lactobacillales; Firmicutes; Bacteria

General Information: Nondairy lactic acid bacterium. Isolated from water in the drain pit of a kitchen sink



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
161463763409919463Island text3.2372129.046941.9902Neighbours21BLASTN+614637.gbk
287575789809922343Island text1.7432918.865520.3841Neighbours21BLASTN+875757.gbk
31254849*127309918251Island text2.3448418.075119.9537Neighbours211254849.gbk
41726234*174809921866Island text1.8561818.783434.0724Neighbours21BLASTN+1726234.gbk