Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_020419: Uncultured Termite group 1 bacterium phylotype Rs-D17 DNA, complete

NCBI: NC_020419

Host Lineage: uncultured Termite group 1 bacterium; enviromental sample; ; ; Elusimicrobia; Bacteria

General Information: The Termite Group 1 (TG1) bacteria are a dominant group in termite guts, where they are part of the symbiotic microbial community that is required for the termite to thrive. The TG1 bacteria are found as intracellular symbionts of various cellulolytic protists.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
1344000*36288218883Island text2.0016428.220144.7995Neighbours21BLASTN344000.gbk
2782337*80392821592Island text1.5207724.381948.7351Neighbours345BLASTN782337.gbk
3870160*88909918940Island text1.9942121.593341.1477BLASTN870160.gbk
492394994212118173Island text1.585520.174735.6164Neighbours21BLASTN923949.gbk
597777899646618689Island text1.5386119.823133.5242Neighbours37BLASTN977778.gbk
61037899*106009922201Island text1.9195519.880835.3088Neighbours21BLASTN1037899.gbk