Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_020411: Hydrogenobaculum sp. HO, complete genome

NCBI: NC_020411

Host Lineage: Hydrogenobaculum; Hydrogenobaculum; Aquificaceae; Aquificales; Aquificae; Bacteria

General Information: Environment: Fresh water; Temp: Thermophile; Temp: 58. Isolated from Yellowstone National Park.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
128995*4924320249Island text1.5243717.564429.4859Neighbours323BLASTN28995.gbk
290538*10951818981Island text1.6134516.211727.9145Neighbours323BLASTN90538.gbk
3114683*15151836836Island text1.6305916.757833.5454Neighbours323BLASTN+114683.gbk
4215432*25810342672Island text1.8784319.189435.9832Neighbours323BLASTN+215432.gbk
5278000*30103123032Island text1.6125416.740630.2777Neighbours323BLASTN+278000.gbk
6558153*57787919727Island text1.7071116.518732.3182Neighbours323BLASTN+558153.gbk
7583503*60739223890Island text1.9287517.13325.2143Neighbours323BLASTN+583503.gbk
8765500*79486129362Island text2.4605726.546336.2261Neighbours323BLASTN765500.gbk
9905335*92754322209Island text1.7570917.327334.8043Neighbours323BLASTN+905335.gbk
10981888*100574923862Island text1.5704219.339734.8611Neighbours323BLASTN981888.gbk
111232962*125756824607Island text2.4072228.517733.713Neighbours323BLASTN+1232962.gbk
121333352*135854925198Island text1.5729217.038529.8453Neighbours323BLASTN+1333352.gbk