Pre_GI Island

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n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_020409: Desulfovibrio piezophilus str. nov C1TLV30 chromosome, complete

NCBI: NC_020409

Host Lineage: Desulfovibrio piezophilus; Desulfovibrio; Desulfovibrionaceae; Desulfovibrionales; Proteobacteria; Bacteria

General Information: Desulfovibrio piezophilus sp. nov. C1TLV30 is able to grow up to 20 MPa. Pressure growth conditions. Nitrogen fixation, Dissimilatory sulfate reduction. Sulfate-reducing, piezophilic and anaerobic bacterium. Isolated from Mediterranean deep-sea falls at a depth of 1700 m



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
177414*10321025797Island text2.0932738.598923.8884Neighbours32BLASTN+77414.gbk
2135699*16067324975Island text1.3964633.785333.6825BLASTN+135699.gbk
3168916*18709918184Island text1.5163632.405243.5132Neighbours32BLASTN168916.gbk
4192508*21526122754Island text1.5526234.117244.0208Neighbours312BLASTN+192508.gbk
5297258*32009922842Island text1.5402935.692948.6838Neighbours320BLASTN+297258.gbk
632991534841618502Island text1.5040732.958442.094Neighbours350BLASTN329915.gbk
7363114*38759924486Island text1.5580734.527437.2226Neighbours32BLASTN363114.gbk
8393329*43297939651Island text1.6615633.790328.7865Neighbours32BLASTN+393329.gbk
9437781*50239464614Island text1.6799233.34327.1755Neighbours32BLASTN+437781.gbk
10512861*54568332823Island text1.6676933.90919.9911Neighbours32BLASTN+512861.gbk
11560278*57878818511Island text1.5052432.842928.3226Neighbours32BLASTN+560278.gbk
12584000*60195517956Island text1.6772632.681826.4953BLASTN+584000.gbk
1362179268410962318Island text1.6878833.688734.6237Neighbours32BLASTN+621792.gbk
141173796119659322798Island text1.5902632.119426.1542Neighbours11BLASTN+1173796.gbk
151328875*134909920225Island text1.556232.85938.3087BLASTN+1328875.gbk
161407857*144945841602Island text1.6344136.940344.0636Neighbours350BLASTN+1407857.gbk
171589044160821319170Island text1.5661534.579732.2573Neighbours312BLASTN+1589044.gbk
181956485197575219268Island text1.6979132.692954.5651Neighbours14BLASTN1956485.gbk
192222000224474022741Island text1.5748532.140724.4731BLASTN+2222000.gbk
202856481289902842548Island text2.4596540.128440.3687Neighbours25BLASTN+2856481.gbk