Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_020304: Desulfocapsa sulfexigens DSM 10523, complete genome

NCBI: NC_020304

Host Lineage: Desulfocapsa sulfexigens; Desulfocapsa; Desulfobulbaceae; Desulfobacterales; Proteobacteria; Bacteria

General Information: Desulfocapsa sulfexigens is capable of sulfur disproportination. This process is highly relevant for the sulfur cycle in the environment. Nitrogen fixation, Dissimilatory sulfate reduction.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
112932115343924119Island text1.5034734.320331.5325Neighbours33BLASTN129321.gbk
2256000*27839122392Island text1.655228.988323.8945Neighbours32BLASTN+256000.gbk
354703656807921044Island text1.664128.188220.5308Neighbours32BLASTN547036.gbk
4752012*77575823747Island text2.2799329.290731.1542Neighbours321BLASTN+752012.gbk
596893699268123746Island text1.6701425.98817.2615Neighbours32BLASTN+968936.gbk
61097478*112159924122Island text1.7672340.200931.5939Neighbours33BLASTN+1097478.gbk
71222000*125033028331Island text1.7173527.095323.7532Neighbours21BLASTN+1222000.gbk
81977249199581918571Island text1.5192327.346854.0992Neighbours25BLASTN+1977249.gbk
92008740*202711318374Island text1.5812226.352721.9698Neighbours212008740.gbk
102107979*215157543597Island text1.5201229.676347.035Neighbours32BLASTN2107979.gbk
112237194226111023917Island text1.9466227.456233.6947Neighbours328BLASTN+2237194.gbk
122306301*232971923419Island text1.6782527.057436.8689Neighbours21BLASTN2306301.gbk
132677372*273472857357Island text1.8775228.798534.524Neighbours21BLASTN+2677372.gbk
143029243304759918357Island text1.9636526.998223.054Neighbours21BLASTN+3029243.gbk
153447847347148523639Island text1.6893524.08816.3114Neighbours328BLASTN+3447847.gbk
163751710377255720848Island text1.7591527.13737.6903Neighbours213751710.gbk