Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_020302: Corynebacterium halotolerans YIM 70093 = DSM 44683, complete

NCBI: NC_020302

Host Lineage: Corynebacterium halotolerans; Corynebacterium; Corynebacteriaceae; Actinomycetales; Actinobacteria; Bacteria

General Information: Soil; Saline soil; Aerobe; Halotolerant; Mesophile; Gram positive. Originally isolated from saline soil in Xinjiang Province in western China.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
18582114074254922Island text2.1111818.579919.2333Neighbours11BLASTN+85821.gbk
214680717014223336Island text1.4951816.749818.6137Neighbours11BLASTN+146807.gbk
374495677609931144Island text3.6041226.923624.9464Neighbours11BLASTN+744956.gbk
41074120109337319254Island text1.7076615.798323.6265Neighbours11BLASTN+1074120.gbk
51241504*127635534852Island text1.5488215.445611.8468Neighbours11BLASTN+1241504.gbk
62116468213885522388Island text3.3135729.979523.8069Neighbours11BLASTN+2116468.gbk
72190500220939218893Island text2.8129419.580328.8768Neighbours11BLASTN2190500.gbk
82219378224609926722Island text1.605217.547722.7174Neighbours11BLASTN+2219378.gbk
92677617*270009922483Island text1.5971415.70424.4092Neighbours11BLASTN+2677617.gbk
102829484*285153022047Island text1.7628615.825620.8643Neighbours11BLASTN2829484.gbk
113014483304598931507Island text3.0511820.231930.4433Neighbours11BLASTN+3014483.gbk