Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_020301: Bartonella vinsonii subsp. berkhoffii str. Winnie, complete genome

NCBI: NC_020301

Host Lineage: Bartonella vinsonii; Bartonella; Bartonellaceae; Rhizobiales; Proteobacteria; Bacteria

General Information: Isolated from host blood of a dog (Canis lupus familiaris) in USA.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
1174467*20609931633Island text1.5575227.204841.6476Neighbours21BLASTN174467.gbk
2669000*71117642177Island text1.5909325.586243.5238Neighbours314BLASTN+669000.gbk
385326787983926573Island text1.6125432.362647.1124Neighbours314BLASTN+853267.gbk
41084993*110332718335Island text1.4966326.252445.7729Neighbours320BLASTN1084993.gbk
51132927115809925173Island text1.6833324.795743.4917Neighbours314BLASTN1132927.gbk
61342924*136271619793Island text1.522525.595837.8142Neighbours314BLASTN+1342924.gbk
71449616*147209922484Island text1.7733123.200444.2015Neighbours314BLASTN1449616.gbk
81486695*151009923405Island text1.8471932.242842.1227Neighbours314BLASTN1486695.gbk