Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS

NC_020299: Candidatus Kinetoplastibacterium oncopeltii TCC290E, complete

NCBI: NC_020299

Host Lineage: Kinetoplastibacterium oncopeltii; Kinetoplastibacterium; ; ; Proteobacteria; Bacteria

General Information: Endosymbiont from the trypanosomatid Strigomonas oncopelti, a parasite of insects.

Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
1127480*15245924980Island text1.6698516.120522.116Neighbours21BLASTN+127480.gbk
2149118*16889819781Island text1.716215.995923.2367Neighbours21BLASTN149118.gbk
3532000*55666024661Island text3.4601419.429528.1662Neighbours314BLASTN532000.gbk
4764526*81749952974Island text3.308818.874926.1821Neighbours21BLASTN764526.gbk