Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS

NC_020292: Clostridium saccharoperbutylacetonicum N1-4(HMT) plasmid Csp_135p,

NCBI: NC_020292

Host Lineage: Clostridium saccharoperbutylacetonicum; Clostridium; Clostridiaceae; Clostridiales; Firmicutes; Bacteria

General Information: This organism produces acetone, butanol and ethanol when grown on molasses, corn mash and other sugar and starch containing substrates.

Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
1326675424921583Island text1.7827213.919629.9691Neighbours2132667.gbk
211028413397923696Island text5.316311.645831.6116Neighbours21BLASTN+110284.gbk