Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_020291: Clostridium saccharoperbutylacetonicum N1-4(HMT), complete genome

NCBI: NC_020291

Host Lineage: Clostridium saccharoperbutylacetonicum; Clostridium; Clostridiaceae; Clostridiales; Firmicutes; Bacteria

General Information: This organism produces acetone, butanol and ethanol when grown on molasses, corn mash and other sugar and starch containing substrates.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
11*2890828908Island text5.5825922.604944.3215Neighbours21BLASTN1.gbk
279502*10385024349Island text2.5118317.884632.5707Neighbours21BLASTN+79502.gbk
3117983*15068032698Island text2.6810217.834731.46Neighbours21BLASTN117983.gbk
4166500*19679930300Island text3.1674117.803336.9083Neighbours21BLASTN166500.gbk
523185325026518413Island text4.3732616.670735.6316Neighbours21BLASTN231853.gbk
627023430031730084Island text2.7487117.450633.0161Neighbours21BLASTN+270234.gbk
739769643204834353Island text2.7337917.851130.8912Neighbours21397696.gbk
846350048909625597Island text2.920518.469936.7097Neighbours21BLASTN+463500.gbk
949100051106420065Island text3.6037317.0126.8209Neighbours21BLASTN491000.gbk
10552104*57702024917Island text5.4330422.868544.3198Neighbours21BLASTN+552104.gbk
11684500*70271718218Island text2.5151717.011231.1426Neighbours21BLASTN684500.gbk
1274432976571421386Island text1.9403317.748931.9211Neighbours21BLASTN+744329.gbk
13795500*85457259073Island text2.7811218.852836.5171Neighbours21BLASTN+795500.gbk
1490263592114818514Island text1.9012516.707230.8259Neighbours21BLASTN+902635.gbk
151014333*103759923267Island text2.312918.044732.7025Neighbours21BLASTN1014333.gbk
161045058*106857123514Island text1.7298816.245127.8109Neighbours21BLASTN+1045058.gbk
171122282114131119030Island text2.2890117.106433.4755Neighbours21BLASTN+1122282.gbk
181149887117209922213Island text2.7369814.521527.7378Neighbours21BLASTN1149887.gbk
191266885130737240488Island text2.2470117.33332.7649Neighbours21BLASTN+1266885.gbk
201389114*141138222269Island text2.7335917.098433.445Neighbours21BLASTN+1389114.gbk
211437431*145705319623Island text3.3419916.989933.2318Neighbours21BLASTN1437431.gbk
221464500*148221117712Island text2.925116.223930.8807Neighbours21BLASTN1464500.gbk
231535402156216926768Island text1.8485216.30932.9273Neighbours21BLASTN+1535402.gbk
241593143161363220490Island text2.5941317.532831.03Neighbours21BLASTN1593143.gbk
251725725175029724573Island text2.1014216.670728.9256Neighbours21BLASTN+1725725.gbk
261810527182940518879Island text2.26616.895734.7911Neighbours21BLASTN+1810527.gbk
271871846189284621001Island text3.3433817.571529.3531Neighbours21BLASTN+1871846.gbk
282040047206064720601Island text1.7678818.072628.1042Neighbours21BLASTN2040047.gbk
292218425223186113437Island text1.6545617.247831.2835Neighbours21BLASTN+2218425.gbk
302291418231430022883Island text2.1413218.457530.5404Neighbours21BLASTN+2291418.gbk
312487575251068823114Island text2.1222915.947229.3885Neighbours21BLASTN2487575.gbk
322701149*272507823930Island text2.4683317.638229.6948Neighbours21BLASTN2701149.gbk
332873000*289187618877Island text2.8655217.158635.1383Neighbours21BLASTN2873000.gbk
343900046392536225317Island text2.8314518.792236.2052Neighbours21BLASTN3900046.gbk
353973084399609923016Island text4.5877517.436822.7007Neighbours21BLASTN+3973084.gbk
364033000405659923600Island text2.6936718.402632.9788Neighbours21BLASTN4033000.gbk
374246500427194125442Island text5.0300621.401540.5725Neighbours21BLASTN4246500.gbk
384305521433056325043Island text1.7121415.251124.1016Neighbours21BLASTN+4305521.gbk
394357425*438031722893Island text3.4451716.707221.9028Neighbours21BLASTN+4357425.gbk
404502467452081718351Island text2.7832116.223930.3569Neighbours21BLASTN+4502467.gbk
414815853483840422552Island text2.3270317.135828.2129Neighbours21BLASTN4815853.gbk
424903981*494131537335Island text2.2942716.695529.718Neighbours21BLASTN+4903981.gbk
434944835500759962765Island text3.119517.278228.5421Neighbours21BLASTN4944835.gbk
445093138512061727480Island text2.1511618.526932.7207Neighbours21BLASTN+5093138.gbk
455409587543252322937Island text2.5437517.199734.9555Neighbours21BLASTN+5409587.gbk
465641444*566381622373Island text2.8033318.407530.6896Neighbours21BLASTN+5641444.gbk
475752099577709925001Island text6.0678221.721542.5228Neighbours21BLASTN+5752099.gbk
485778999580315424156Island text6.6776821.30442.738Neighbours21BLASTN5778999.gbk
495808856585259243737Island text3.5799717.284132.6606Neighbours21BLASTN+5808856.gbk
505981006600872727722Island text1.8048421.557632.5403Neighbours21BLASTN5981006.gbk
516055282*607394118660Island text2.920917.090235.1931Neighbours21BLASTN6055282.gbk
526216000*625247336474Island text4.9508319.660338.226Neighbours21BLASTN6216000.gbk
536274030629482420795Island text2.0867117.377528.2738Neighbours21BLASTN+6274030.gbk
546310000633341723418Island text2.367815.977627.2201Neighbours21BLASTN+6310000.gbk
556426704645309926396Island text5.6432621.38842.34Neighbours21BLASTN+6426704.gbk