Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_020272: Bacillus amyloliquefaciens IT-45, complete genome

NCBI: NC_020272

Host Lineage: Bacillus amyloliquefaciens; Bacillus; Bacillaceae; Bacillales; Firmicutes; Bacteria

General Information: Bacillus amyloliquefaciens is a member of a group of free-living soil bacteria known to promote plant growth and suppress plant pathogens. Bacillus amyloliquefaciens is able to degrade myo-inositol hexakisphosphate (phytate), making phosphorus more available to plants. This organism also produces antifungal and antibacterial substances, such as bacillomycin D, surfactin, and bacillaene, which protect the plant from pathogenic organisms. In addition, proteases and amylases produced by Bacillus amyloliquefaciens are used in industrial applications.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
1204354679826364Island text1.9575336.482715.9923Neighbours23BLASTN+20435.gbk
284227*11562931403Island text2.7666536.816919.3354Neighbours23BLASTN+84227.gbk
3162779*18717724399Island text1.4798132.216717.5052Neighbours31BLASTN+162779.gbk
443050045560725108Island text2.2815137.302833.4828Neighbours31BLASTN+430500.gbk
5599064*62501625953Island text1.590827.684216.5428Neighbours23BLASTN599064.gbk
61311932*135853446603Island text1.9150434.26853.6824Neighbours319BLASTN+1311932.gbk
71384525140811723593Island text1.6268630.583536.1348Neighbours23BLASTN+1384525.gbk
82077795*210909931305Island text1.530931.377722.4327Neighbours21BLASTN+2077795.gbk
92692746271225719512Island text1.9538733.858124.6485Neighbours21BLASTN+2692746.gbk
102748733*279886350131Island text1.6909728.514120.8186Neighbours319BLASTN+2748733.gbk
113187482321066223181Island text1.7876230.112735.7479BLASTN+3187482.gbk
123245834*326920123368Island text1.5053634.397348.1788Neighbours31BLASTN+3245834.gbk
133325000*334759922600Island text1.7461828.614444.9263Neighbours31BLASTN+3325000.gbk
143396800*343021233413Island text1.4498329.310628.8708Neighbours21BLASTN+3396800.gbk
153706722*373604029319Island text1.8561531.688622.5153Neighbours31BLASTN+3706722.gbk