Pre_GI Island

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n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_020260: Cronobacter sakazakii Sp291, complete genome

NCBI: NC_020260

Host Lineage: Cronobacter sakazakii; Cronobacter; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This bacterium, formerly Enterobacter sakazakii, is associated with infant septicemia, meningitis, and necrotizing enterocolitis. Originally isolated from powdered formula, it has also been shown to compartmentalize cerebral ventricles and cause brain abcesses in neonates. This species produces a yellow pigment when grown at 30 degrees C, but this fades at 37 degrees C.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
1263528*29118227655Island text1.6958134.054547.1904Neighbours41BLASTN263528.gbk
231280533684424040Island text2.0740838.562433.5995Neighbours51BLASTN+312805.gbk
3440000*46819628197Island text1.4911936.946734.6084Neighbours41BLASTN+440000.gbk
4603796*65197748182Island text2.0440139.906842.7798Neighbours51BLASTN+603796.gbk
588230791401031704Island text2.1001740.721126.6333Neighbours41BLASTN+882307.gbk
61111130*113509923970Island text1.5087330.593452.2902Neighbours51BLASTN+1111130.gbk
71184174121484630673Island text1.8061839.707224.1671Neighbours41BLASTN1184174.gbk
81293860132559931740Island text2.262642.097828.5804Neighbours51BLASTN+1293860.gbk
91535394*155809922706Island text4.6573748.558322.9502Neighbours41BLASTN+1535394.gbk
101615135164710731973Island text2.975543.487519.4662Neighbours41BLASTN+1615135.gbk
111993344201786024517Island text1.4366430.228618.5102Neighbours51BLASTN+1993344.gbk
122725201*275882333623Island text2.8997345.431325.8621Neighbours41BLASTN+2725201.gbk
133004500*302796523466Island text2.0315237.233536.3813Neighbours41BLASTN3004500.gbk
143277007330315226146Island text2.4639339.389825.0056Neighbours51BLASTN+3277007.gbk
153355814338153125718Island text1.892839.531726.8445Neighbours41BLASTN3355814.gbk
163457597348032822732Island text1.6731933.485849.802Neighbours41BLASTN+3457597.gbk
173836500386459928100Island text2.6482439.326524.6702Neighbours41BLASTN3836500.gbk
183931567*395659925033Island text2.3198943.424928.7144Neighbours51BLASTN+3931567.gbk
194029951*405110621156Island text1.3613232.721327.4881Neighbours51BLASTN4029951.gbk