Pre_GI Island

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n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_020211: Serratia marcescens WW4, complete genome

NCBI: NC_020211

Host Lineage: Serratia marcescens; Serratia; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This organism was discovered in 1819 by Bizio who named the organism after the Italian physicist Serrati. It was considered a nonpathogenic organism until late in the 20th century, although pathogenicity was noted as early as 1913. Serratia marcescens is an opportunistic human pathogen that is increasingly associated with life-threatening hospital-acquired infections. It is an environmental organism that has a broad host range, and is capable of infecting vertebrates and invertebrates, as well as plants. In humans, Serratia marcescens can cause meningitis (inflammation of the membrane surrounding the brain and spinal cord), endocarditis (inflammation of heart muscle) and pyelonephritis (inflammation of the kidneys). Many strains are resistant to multiple antibiotics. Environmental isolates are noted by production of the red pigment prodigiosin.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
1103371*12946526095Island text2.2614133.708643.3423Neighbours41BLASTN+103371.gbk
2379000*40159422595Island text1.9413431.416343.8952Neighbours41BLASTN+379000.gbk
3554736*59042335688Island text1.8694132.349747.1015Neighbours41BLASTN554736.gbk
4689451*71226522815Island text1.9901335.463940.9392Neighbours52BLASTN689451.gbk
5996497*103223335737Island text3.7636743.188129.6369Neighbours41BLASTN+996497.gbk
61621000164274521746Island text1.8748135.304849.2794Neighbours41BLASTN+1621000.gbk
71655826*167870522880Island text2.0865230.126851.3689Neighbours41BLASTN+1655826.gbk
81704500175039445895Island text2.5378939.888534.963Neighbours41BLASTN+1704500.gbk
92012480*204710134622Island text1.6305132.430827.0475Neighbours41BLASTN+2012480.gbk
102094500211209917600Island text1.3467227.966921.7079Neighbours41BLASTN+2094500.gbk
112123819214659922781Island text3.3246346.893931.4433Neighbours41BLASTN+2123819.gbk
122206500222782621327Island text7.7160853.469218.9415Neighbours41BLASTN+2206500.gbk
132882093*291409932007Island text1.5138926.878624.1199Neighbours41BLASTN+2882093.gbk
142985157300925724101Island text1.6976632.966230.5419Neighbours41BLASTN2985157.gbk
153151458317575024293Island text1.7314131.354148.3814Neighbours41BLASTN+3151458.gbk
163398281*342338225102Island text3.0438347.723830.8344Neighbours41BLASTN+3398281.gbk
173535622355884723226Island text1.738132.029625.6665Neighbours41BLASTN+3535622.gbk
184168189*419217623988Island text2.1334638.787533.9337Neighbours41BLASTN+4168189.gbk
194484817*450328218466Island text1.4564733.663726.0263Neighbours41BLASTN+4484817.gbk
204598217463062032404Island text1.7518339.585420.9526Neighbours41BLASTN+4598217.gbk