Pre_GI Island

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n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_020210: Geobacillus sp. GHH01, complete genome

NCBI: NC_020210

Host Lineage: Geobacillus; Geobacillus; Bacillaceae; Bacillales; Firmicutes; Bacteria

General Information: Recent rDNA analysis and DNA-DNA hybridization studies using spore-forming thermophilic subsurface isolates from formation waters of oilfields in Russia, Kazakhstan and China provided enough evidence to define the phylogenetically distinct, physiologically and morphologically consistent taxon Geobacillus. Geobacillus species are chemo-organotrophic, obligately thermophilic, neutrophilic, motile, spore-forming, aerobic or facultatively anaerobic.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
1661236*68494423709Island text1.7769335.920145.7338Neighbours31BLASTN+661236.gbk
278863981669028052Island text1.6997536.410243.129Neighbours31BLASTN+788639.gbk
3901240*93070729468Island text1.8413635.212343.3329Neighbours31BLASTN+901240.gbk
41275031*135586780837Island text1.6755733.5831.7186Neighbours319BLASTN+1275031.gbk
51704500*175948154982Island text1.8235936.401140.0823Neighbours31BLASTN+1704500.gbk
61908000193254124542Island text1.7191532.700846.6274Neighbours31BLASTN+1908000.gbk
71951746197774826003Island text1.8177334.181748.2871Neighbours31BLASTN+1951746.gbk
82044944207468329740Island text1.5397830.684629.7905Neighbours31BLASTN+2044944.gbk
92133996*220228168286Island text2.4987741.284418.5974Neighbours319BLASTN+2133996.gbk
102969862*300083330972Island text2.4200239.481834.5179Neighbours31BLASTN+2969862.gbk
113169258318881019553Island text1.9504134.692627.9361Neighbours31BLASTN3169258.gbk
123246839326692720089Island text1.8641934.558241.2896Neighbours31BLASTN+3246839.gbk
133341976340522263247Island text1.6757830.930920.2712Neighbours312BLASTN+3341976.gbk