Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_020209: Pseudomonas poae RE*1-1-14, complete genome

NCBI: NC_020209

Host Lineage: Pseudomonas poae; Pseudomonas; Pseudomonadaceae; Pseudomonadales; Proteobacteria; Bacteria

General Information: Pseudomonas poae RE*1-1-14 is component of a microbial product applied as seed treatent to control Rhizoctonia solani in sugar beets. Isolated from endorhiza sugar beet.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
147504*12622978726Island text1.869629.297921.9832Neighbours11BLASTN+47504.gbk
239737645309955724Island text2.384733.31327.8132Neighbours11BLASTN+397376.gbk
3945000*96809923100Island text1.7922728.761925.5979Neighbours11BLASTN+945000.gbk
4997385*104138844004Island text3.930241.298442.7676Neighbours41BLASTN+997385.gbk
51847895*187267824784Island text2.6586531.316848.1303Neighbours11BLASTN+1847895.gbk
61903830192917925350Island text1.5425628.471530.2717Neighbours11BLASTN1903830.gbk
71949500197652927030Island text2.2404130.177329.5391Neighbours11BLASTN+1949500.gbk
81986503202425537753Island text2.3775431.722624.2632Neighbours11BLASTN+1986503.gbk
92119845*214457424730Island text2.4168632.057728.1069Neighbours11BLASTN2119845.gbk
102838582285936520784Island text2.0873731.99521.3766Neighbours11BLASTN+2838582.gbk
113262000328797525976Island text1.6180727.105125.736Neighbours11BLASTN+3262000.gbk
123797830*382020322374Island text1.4225426.0729.3763Neighbours11BLASTN+3797830.gbk
133874844390437229529Island text2.8100233.323244.0119Neighbours11BLASTN+3874844.gbk
144312892*435777044879Island text2.0424529.895527.6645Neighbours11BLASTN+4312892.gbk
154549563457659927037Island text2.0746432.075941.8985Neighbours11BLASTN+4549563.gbk
164643901466711323213Island text3.8033940.751427.6099Neighbours11BLASTN+4643901.gbk
174768500*481226743768Island text2.8818844.497527.5519Neighbours11BLASTN+4768500.gbk
184943734497459930866Island text1.5997430.957243.1102Neighbours52BLASTN+4943734.gbk
195077410*511615938750Island text2.2037630.215128.4387BLASTN+5077410.gbk