Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_020164: Staphylococcus warneri SG1, complete genome

NCBI: NC_020164

Host Lineage: Staphylococcus warneri; Staphylococcus; Staphylococcaceae; Bacillales; Firmicutes; Bacteria

General Information: Staphylococcus warneri is an aerobic, gram-positive coccus. It is a common member of the normal human skin microflora. It is an opportunistic pathogen in immunocompromised patients.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
18921411523326020Island text1.591623.100328.0007Neighbours21BLASTN+89214.gbk
228008730056620480Island text1.5407719.032734.6632Neighbours21BLASTN+280087.gbk
3701151*72886827718Island text1.6677122.759932.8568Neighbours325BLASTN+701151.gbk
488751091047422965Island text5.2110225.091639.8143Neighbours21BLASTN+887510.gbk
51037979*105773719759Island text4.9577623.741937.9658Neighbours21BLASTN+1037979.gbk
61356798139001033213Island text2.0632626.436947.8743Neighbours325BLASTN1356798.gbk
71590221*161409923879Island text4.7919530.440641.7488Neighbours21BLASTN1590221.gbk
81677452171150734056Island text1.8007820.112935.6596Neighbours21BLASTN+1677452.gbk
91784223180548221260Island text1.4992825.2741.4483Neighbours21BLASTN+1784223.gbk
102219612*224771828107Island text1.6826317.996125.8619Neighbours21BLASTN+2219612.gbk
112329340234976120422Island text2.2262418.884834.1247Neighbours325BLASTN+2329340.gbk